| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0156 |
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| Symbol | |
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| ID | 4250878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 177691 |
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| End bp | 179793 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638116699 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_732294 |
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| Protein GI | 113968501 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00486082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCTGG CGCCACTATG
CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAAGG CACTGATATC
CAAGAGTTTA TCAACATTGT TGGTAAAAAC CTGAATAAAA CCATCATTGT TGACCCGACC
ATTCGCGGCA AGATCAACGT GCGCAGTTAT GATCTGCTCA ACGATGAGCA GTATTACCAA
TTCTTCCTCA ACGTGCTGCA AGTGTACGGT TATGCCATCG TCGAGATGGA AAACAACGTC
ATTAAAGTCA TTAAAGACAA AGATGCTAAA ACCGCGGCGA TTCGTGTTGC TAACGACAAC
GACCCAGGTT TAGGTGATGA AATGGTCACC CGCATCGTGG CGCTGTACAA CACCGAAGCC
AAGCAATTAG CACCGTTATT ACGTCAGTTA AACGATAACG CCGGTGGCGG TAACGTAGTG
AACTACGACC CATCGAACGT ACTGATGTTG TCAGGCCGCG CCGCTGTGGT GAACAAGTTA
GTTGAAATCG TTCGCCGTGT AGATAAGCAG GGCGATACCT CGGTACAAGT GGTGCCGCTC
GAATACGCCT CAGCCGGTGA AATGGTGCGA ATTATCGATA CTCTTTACCG CGCGACAGCT
AACCAAGCGC AGCTCCCAGG ACAAGCGCCC AAGGTCGTTG CCGACGAGCG CATTAACGCC
GTAGTGGTCA GTGGTGACGA AAAGAGCCGC CAACGCGTGG TTGAGCTTAT CCATCGCCTC
GATGCCGAGC AGGCCAGCAC GGGCAATACT AAGGTACGTT ATTTACGTTA TGCCAAGGCT
GAAGATTTAG TCGAGGTGCT GACCGGATTT GCGCAAAAGC TTGAGGGTGA AAAAGATCCA
AGCGCCCAGG CTGGCGGTAA ACGTCGTAAT GAAATCAATA TTATGGCCCA CACGGATACT
AACGCCTTAG TGATCAGCGC CGAGCCAGAT CAAATGCGCA CTATCGAGAG TGTGATTAAC
CAACTCGATA TTCGCCGCGC CCAAGTATTA GTCGAAGCCA TTATCGTGGA AGTCGCCGAA
GGCGATAACG TCGGTTTTGG TGTGCAATGG GCCGCTAAAG CGGGCGGTGG TACTCAGTTC
AATAACTTAG GCCCAACCAT TGGTGAAATT GGCGCCGGTA TTTGGCAGGC ACAGGGAGAA
GATGGGACAA CTGTTTGTAC CGAGAATGGC ACTTGTACTG AAAACCCAGA TTCTAGAGGT
GATGTGACTT TACTTGCCCA AGCCTTAGGT AAAGTGAATG GTATGGCTTG GGGCGTGGCC
ATGGGCGACT TTGGCGCCTT AATACAAGCA GTATCGGCCG ATACCAACTC AAACGTACTG
GCGACACCTT CGATTACAAC TCTAGATAAC CAAGAAGCCT CGTTTATCGT CGGTGACGAA
GTGCCGATTC TGACCGGTTC TACCGCCAGC TCAAACAACA GTAACCCATT CCAAACCGTT
GAACGTAAAG AGGTTGGGGT GAAGTTAAAA GTTGTGCCTC AGATCAACGA AGGCAACGCG
GTTAAGCTCG CCATTGAGCA AGAAGTCTCG GGTGTAAACG GTAATACGGG TGTAGATATC
TCCTTCGCGA CTCGCCGTTT AACCACCACT GTGATGGCTG ACTCAGGGCA AATCGTGGTA
CTCGGTGGTT TGATTAACGA AGAAGTCCAA GAAAGTGTCC AGAAAGTACC ATTCCTCGGT
GATATTCCGG TACTCGGACA CTTATTCAAA TCTTCTTCCA GTAAGAAGAC CAAAAAGAAC
CTGATGATCT TCATCAAGCC CACCATTATC CGTGATGGTG TGACTATGGA AGGCATCGCA
GGCCGTAAAT ACAACTATTT CAGAGCATTA CAACTTGAGC AGCAAGAGCG CGGCGTGAAC
CTAATGCCAA ATACTCAAGT GCCAATTCTG GAAGAATGGA ATCAATCTGA ATATTTGCCG
CCCGAAGTGA ACGACATTTT AGATCGTTAC AAAGAAGGCA AAGGGTTAGA CACCCAGATG
CGTGAAACGG ACTCGACCCT CAAGTCGCTG GATGAAAACA AGAACAAAGA TAAAACACAA
TGA
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| Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN
DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQAQLPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
SAQAGGKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE
GDNVGFGVQW AAKAGGGTQF NNLGPTIGEI GAGIWQAQGE DGTTVCTENG TCTENPDSRG
DVTLLAQALG KVNGMAWGVA MGDFGALIQA VSADTNSNVL ATPSITTLDN QEASFIVGDE
VPILTGSTAS SNNSNPFQTV ERKEVGVKLK VVPQINEGNA VKLAIEQEVS GVNGNTGVDI
SFATRRLTTT VMADSGQIVV LGGLINEEVQ ESVQKVPFLG DIPVLGHLFK SSSSKKTKKN
LMIFIKPTII RDGVTMEGIA GRKYNYFRAL QLEQQERGVN LMPNTQVPIL EEWNQSEYLP
PEVNDILDRY KEGKGLDTQM RETDSTLKSL DENKNKDKTQ
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