Gene Shewmr4_0072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0072 
Symbol 
ID4250951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp83337 
End bp84476 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content53% 
IMG OID638116614 
Producttransport protein, putative 
Protein accessionYP_732210 
Protein GI113968417 
COG category[P] Inorganic ion transport and metabolism
[C] Energy production and conversion 
COG ID[COG1668] ABC-type Na+ efflux pump, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.177811 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAA TCATCGCAAT GGTTCGCAAG GAACTGATAG ACGCCGCCCG CGATAAACGC 
TCTGTGATGG CGGGCCTCTA CTACGCCATC GGCACGCCGC TGATCATGTG TGGCCTGTTT
ATGGTGCTTA TCGGCCAACT GACCAGCCCG GACGATCTCA AAATCAGCAT CACTAACCCC
GACAAAGCAC CTGACTTAGT GAGATTTTTG TCCAACAAGG GCATTACCCA AGGTGAAGCT
GGCGCTAAGG ATCTGAAAGC CATCGAGCTG ATTATCAGCC CCGACTATGC CAAGCAGATG
AACCAAGGCA AAGGCGCCGA AATCACTATC GTGGCCGATA ACTCAGAGGA AAAACTGCAA
AACTCGATTC GTCGCTTAGA GAAACAGTTG CAGGCCTACA GCGCCGAAAT GGGCAGCCTA
CGCTTAATCG CCCGTGGCAT CGACCCTCGA GTGGTGCAGC CACTGAAAGT GAATGTGCAT
GACCAAGCCA CGACCGACTC TAAGGGCGGG ATGATTTTAG GCATCGCCAT TTTCACTATG
ATTTATTCAG TGTTTATCTC GGGGATGAAT CTGGCCATCG ACACCAGCGC CGGTGAGCGT
GAGCGCAACT CCTTGGCATT GTTACTCAGC CATCCGCTGA CCACACGCCA GTTAGTGCTC
TCGAAAATCA TCGCCGTCGG CCTGTTTGCC CTGCTCGGCT TAGTGTTGAT TTTACTGGTG
TCTAAGGTCG CCTATACCTT CGTGCCTTGG CAGGAACTCG GCTTTAGCGT CAGCATCACC
AATGAGTTTA TGGCGCTAAT GCTGCTGGTC GGTATTCCCG TCGCGCTGAT GGCCGCCTGT
CTGCAATTGT TTGTGTCCTT TATGGCCAAA ACCTTTAAGG AAGCCCAGTC CTACCTGACC
ATGGTGTTGT TTGTGCCCTT GGCGCTATCG ATGGCGGCCA GCTACAACAT AGCGCCGGAC
ATTCTGCAAT GGTTGCCCGT CTCCGGTCAG CAACAGGCGC TGATGGACTT TATCAAAGGT
AAGGACATGA GCATGCTGCA ACTGCTGGTA TCGACGCTCG ACACCCTAGC CATCGCCCTC
GTCTTGGCGC TTGGTATGGA AAAATCCTTA AAGAGTGAAA AAGTGGTCTT CGGCTTATAA
 
Protein sequence
MNKIIAMVRK ELIDAARDKR SVMAGLYYAI GTPLIMCGLF MVLIGQLTSP DDLKISITNP 
DKAPDLVRFL SNKGITQGEA GAKDLKAIEL IISPDYAKQM NQGKGAEITI VADNSEEKLQ
NSIRRLEKQL QAYSAEMGSL RLIARGIDPR VVQPLKVNVH DQATTDSKGG MILGIAIFTM
IYSVFISGMN LAIDTSAGER ERNSLALLLS HPLTTRQLVL SKIIAVGLFA LLGLVLILLV
SKVAYTFVPW QELGFSVSIT NEFMALMLLV GIPVALMAAC LQLFVSFMAK TFKEAQSYLT
MVLFVPLALS MAASYNIAPD ILQWLPVSGQ QQALMDFIKG KDMSMLQLLV STLDTLAIAL
VLALGMEKSL KSEKVVFGL