Gene Shewmr4_0066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0066 
Symbol 
ID4250945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp77389 
End bp79785 
Gene Length2397 bp 
Protein Length798 aa 
Translation table11 
GC content49% 
IMG OID638116608 
ProductTonB-dependent receptor 
Protein accessionYP_732204 
Protein GI113968411 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000206959 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.55765e-08 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAATC GCACATCACA ACAATTCTTG TTAAGTACCA TCGCCGTCTT GGTGAGTTCT 
CAGCTTTGGG CTGCCGATGC ACCCGCGCAG GAAGAAACCA AGAAAGATGC GTTAGGCCTC
GAGCGTATTA CCGTTACGGG CGTTGCTCGT GGTACCCGCG TCATGGACTC GAGCGTGTCA
GTTAGCAGCG TATCACTCGC CGAGTTGGAG GTTAGTACTC CCCGTTCATC TGCCGAAGCA
TTCCGGATCA TTCCGGGGAT GAAGGTGGAA TCAACGGGTG GTGAAGGTAA CGCTAACATT
GCTGTCCGTG GCTTACCTGT GGCATCGGGC GGTGCTAAGT TTCTTCAAAT CCAAGAAGAT
GGATTACCTA TTCTGCAGTT TGGCGATATT GCCTTTGGTA ATGCGGATAT CTTCTTACGC
TTAGATTCTA CAGTGCAAAC CATTGAATCG ATTCGCGGTG GTTCGGCGTC TACTGCGGCC
AGTAATGCTC CCGGCGGTAT TATTAACGTG ATCAGTAAAA CTGGTAGCTC GGATGCTGGC
AGCGTGTCTA CCACCTTTGG CTTGGACTAC GATACCTTCC GCACCGACTT TGAATATGGC
ACGAGTATCA ATGACAGCCT GCGTTTCCAT GTGGGGGGAT TTGTGCGGAC TGGCGAAGGT
CCTCGCCAAG CTGGTTATGA TGCCAACAAG GGCGGCCAGG TAAAAGCCAA CATTACCAAA
GAGTTCGATA GTGGCTATGT TCGTCTTTAT TTTAAACACT TAGATGATAA GAGTATTGGC
TACTTACCCA TGCCAATGTA TTCGGACGGT AGTTCTGTCC CAGGTTTTAA TGCGAAATCC
GATGCCATTC AATCAGCTTA TTTCCTCTCA ACCCTGAGTT TAGGTGCCGA TGGTGAGCGT
CGTCGTGGTG ATATGCGCGA TGGTATGAAT CCTGAGGTTA ACTCTGTGGG ATTAGAAGCG
TCTTTTGATT TGGGCAATGA TTGGCAAGTC GAAAACCGTT TCCGTTTCTC GGATGTGAGC
GGTAATTTTA TGGCGCCATT CCCTGCCGAA GTGGCTAATG GAGCCGACAT TGCGGCCAGT
ATTGCCGGCA CTGGCGCCAA GTTGATTTAT GCCAATGGTC CCGATGCGGG CAATCCTATG
GATGGACTCG CCATGCGTAT CCATACCTTC GACGTCAAGA TGAATGACTT TGGCTCAATC
GTAAACGACT TAAAATTAAC GAAAACTTTT GACGATACCA GCGTTACTCT GGGTTATTAC
AATGCCACCC AAAATATCAA TATGACCTGG ATGTGGAACT CCTATCTGAT GGAAGTCAAA
GGGGATAACG CCGCATTGCT CGATGTGGTG GCCGCCGATG GTACCGCCTA TTCCGATGCT
GGGCTCTACG GCTATGGTGT GCCTTATTGG GGCAACTGTT GCCAACGTAA TTACGATACC
GAATACAACA TTAAGGCGCC TTATCTTGCG GTAGCGTCAA GCTTTGGGGA TTTGTCGCTG
GATGCCAGTG TGCGGTACGA CAGCGGTGAT GCCAGTGGTT ACTACGCAGG TAATGTGCAA
TCGCAAGTGG ATATGAACTT GGATGGCGTT ATCTCTATTC CTGAGCAGAG CGTCTCTTCT
ATCGATAATG CCAATCCGCA ACCTGTGAAT TATGACTGGA GCTACACCTC CTATTCACTC
GGCGCAAATT ATCAGTTTGA CAGTGATTTA GCCGCCTTTG GTCGCTTGAG TCATGGTGGC
CGCGCCAATG CGGATCGCCT GTTATTTGGT AAGGTTCGTG CCGATGGTTC AGTGGCAAAA
GAAGACGCTG TCGATAATGT GGATCAATAT GAGTTAGGCG TTAAGTACCG TTACGATGAT
TTATCTGTGT TCGCGACCGC TTTCTATTCA GAGACCGAAG AGCAAAACTT CGAGGCGACC
AGTCAGCGTT TCTTCGACCG TAAGTACAAA GCCAAAGGTA TTGAAATTGA ATCGGCCTAT
TTTATCGGTG ACTTCGATTT TAGGGGCAAT GTCACTTGGA CCGACGCTGA AATTGCCAAG
GATGCGTTAA CGCCAGACGT TGTGGGGAAT ACCCCAAGAA GACAGGCCGA CTTTATCTAC
TCGCTGATGG GCCGTTATAA CTTTGACCAA GGCTCAGTGG GCATCAACCT GATTGGTACC
ACTGACTCCT ATGCACAGGA TAATAATGAT CTCAAGTTTG ATGGTTACAA TCAGGTCAAT
GCCTTTGCAA CCTACAACTT GACTCAGGCC TTAAGCGTCT CGTTAAACGT CAACAACCTG
TTTGACGCCA CGGGTATCAC CGAAGCTGAA GAGGGTTCGA TTCCTGATAA CAATATTATC
CGTGCTCGCA CCATTAATGG CAGAACCACG AGTGCAACCT TGAGATACGA GTTTTAA
 
Protein sequence
MINRTSQQFL LSTIAVLVSS QLWAADAPAQ EETKKDALGL ERITVTGVAR GTRVMDSSVS 
VSSVSLAELE VSTPRSSAEA FRIIPGMKVE STGGEGNANI AVRGLPVASG GAKFLQIQED
GLPILQFGDI AFGNADIFLR LDSTVQTIES IRGGSASTAA SNAPGGIINV ISKTGSSDAG
SVSTTFGLDY DTFRTDFEYG TSINDSLRFH VGGFVRTGEG PRQAGYDANK GGQVKANITK
EFDSGYVRLY FKHLDDKSIG YLPMPMYSDG SSVPGFNAKS DAIQSAYFLS TLSLGADGER
RRGDMRDGMN PEVNSVGLEA SFDLGNDWQV ENRFRFSDVS GNFMAPFPAE VANGADIAAS
IAGTGAKLIY ANGPDAGNPM DGLAMRIHTF DVKMNDFGSI VNDLKLTKTF DDTSVTLGYY
NATQNINMTW MWNSYLMEVK GDNAALLDVV AADGTAYSDA GLYGYGVPYW GNCCQRNYDT
EYNIKAPYLA VASSFGDLSL DASVRYDSGD ASGYYAGNVQ SQVDMNLDGV ISIPEQSVSS
IDNANPQPVN YDWSYTSYSL GANYQFDSDL AAFGRLSHGG RANADRLLFG KVRADGSVAK
EDAVDNVDQY ELGVKYRYDD LSVFATAFYS ETEEQNFEAT SQRFFDRKYK AKGIEIESAY
FIGDFDFRGN VTWTDAEIAK DALTPDVVGN TPRRQADFIY SLMGRYNFDQ GSVGINLIGT
TDSYAQDNND LKFDGYNQVN AFATYNLTQA LSVSLNVNNL FDATGITEAE EGSIPDNNII
RARTINGRTT SATLRYEF