Gene Shewmr4_0063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0063 
Symbol 
ID4250942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp73081 
End bp74109 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content48% 
IMG OID638116605 
ProductLacI family transcription regulator 
Protein accessionYP_732201 
Protein GI113968408 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.67552e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAACTA AAAACTGGAC CTTAAAGAGC ATAGCAAACG AGCTAGGTGT CTCTAACGCC 
ACTGTTTCTA ATGCTTTTAA TCGTCCCGAT CAGCTATCGG AAAAACGTCG CAACGAGATT
TTAGCCGCCT GCTCTAAACT GGGGTATTTT GGCCCAAATA AGGCGGCGCA GTCCCTACGT
AGGGGCAAAT TTGATACCGT CGCGCTGGTA CTGTCCGATA GTGTTGAATA TATGGTGTCC
GATCCTGTCG CCAGTAAGTT TATGAAGGGG GTGGCTTCGG TATTGGAGCG GGAAAAACTC
AACTTACTGC TATTTTCTGG CAGCTCCGAC AGTGTGAATG CGGTGGCCGA TTTTGTGGAT
GGGTTTATTT GTTATGGTCG CCCGCGCAAT GCCTTGCTCG CCGAGCAATT AAAACAGGTT
AAGAAGAAGG TGGTTACTGT GGATTTTGAT ATCCACCGCA ACGCCTCTGT CAGCATTGAC
AATAAGTTAG CCGCCTATGA GGTGGCAAAA TTGGCGTTAA AATCTCCCAC CGATCAAGTT
GCAATATTGG GATTGAGGCT ACTCGATACC CATTTAACCT GCCGAGTTTA CGATTTGAAT
TTGCTCGAAA TCGATATGTC GATTGCGCAC CAGAGGTTGC AGGGATATTT ACAGGCGATT
GAGGAAACGG GTGTCACCCT TGGTAATGAT CGGATTTGGA ATATTCCGGA AAGTAATGCG
GAGTATGCGC GGATTGCGGC CAAGGAGGCA TTAAACTCAA CCCCAAGACC CAATGTATTT
TTATGCATGA GCGACTTAAT TGCCCTCAGC GTGCTGGGTG AGGCGCAGGC CATGGGATTA
GCGATTCCGG AGGATATTCG TGTCGTGGGA TTTGATGGTA TTGATGAGGC GACTCGCTCG
AATCCACCAC TGACCACGGT TTACCAATAC TCGGAACAAA AAGGCCAAAT GGCGGCGCAG
ATGTTTATCG ACGATGCCGT GCATGCTCAG GTATTAGGGT ATGAACTACG TTTAGGCAAA
AGCTGTTAA
 
Protein sequence
MTTKNWTLKS IANELGVSNA TVSNAFNRPD QLSEKRRNEI LAACSKLGYF GPNKAAQSLR 
RGKFDTVALV LSDSVEYMVS DPVASKFMKG VASVLEREKL NLLLFSGSSD SVNAVADFVD
GFICYGRPRN ALLAEQLKQV KKKVVTVDFD IHRNASVSID NKLAAYEVAK LALKSPTDQV
AILGLRLLDT HLTCRVYDLN LLEIDMSIAH QRLQGYLQAI EETGVTLGND RIWNIPESNA
EYARIAAKEA LNSTPRPNVF LCMSDLIALS VLGEAQAMGL AIPEDIRVVG FDGIDEATRS
NPPLTTVYQY SEQKGQMAAQ MFIDDAVHAQ VLGYELRLGK SC