Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0063 |
Symbol | |
ID | 4250942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 73081 |
End bp | 74109 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638116605 |
Product | LacI family transcription regulator |
Protein accession | YP_732201 |
Protein GI | 113968408 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000367552 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAACTA AAAACTGGAC CTTAAAGAGC ATAGCAAACG AGCTAGGTGT CTCTAACGCC ACTGTTTCTA ATGCTTTTAA TCGTCCCGAT CAGCTATCGG AAAAACGTCG CAACGAGATT TTAGCCGCCT GCTCTAAACT GGGGTATTTT GGCCCAAATA AGGCGGCGCA GTCCCTACGT AGGGGCAAAT TTGATACCGT CGCGCTGGTA CTGTCCGATA GTGTTGAATA TATGGTGTCC GATCCTGTCG CCAGTAAGTT TATGAAGGGG GTGGCTTCGG TATTGGAGCG GGAAAAACTC AACTTACTGC TATTTTCTGG CAGCTCCGAC AGTGTGAATG CGGTGGCCGA TTTTGTGGAT GGGTTTATTT GTTATGGTCG CCCGCGCAAT GCCTTGCTCG CCGAGCAATT AAAACAGGTT AAGAAGAAGG TGGTTACTGT GGATTTTGAT ATCCACCGCA ACGCCTCTGT CAGCATTGAC AATAAGTTAG CCGCCTATGA GGTGGCAAAA TTGGCGTTAA AATCTCCCAC CGATCAAGTT GCAATATTGG GATTGAGGCT ACTCGATACC CATTTAACCT GCCGAGTTTA CGATTTGAAT TTGCTCGAAA TCGATATGTC GATTGCGCAC CAGAGGTTGC AGGGATATTT ACAGGCGATT GAGGAAACGG GTGTCACCCT TGGTAATGAT CGGATTTGGA ATATTCCGGA AAGTAATGCG GAGTATGCGC GGATTGCGGC CAAGGAGGCA TTAAACTCAA CCCCAAGACC CAATGTATTT TTATGCATGA GCGACTTAAT TGCCCTCAGC GTGCTGGGTG AGGCGCAGGC CATGGGATTA GCGATTCCGG AGGATATTCG TGTCGTGGGA TTTGATGGTA TTGATGAGGC GACTCGCTCG AATCCACCAC TGACCACGGT TTACCAATAC TCGGAACAAA AAGGCCAAAT GGCGGCGCAG ATGTTTATCG ACGATGCCGT GCATGCTCAG GTATTAGGGT ATGAACTACG TTTAGGCAAA AGCTGTTAA
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Protein sequence | MTTKNWTLKS IANELGVSNA TVSNAFNRPD QLSEKRRNEI LAACSKLGYF GPNKAAQSLR RGKFDTVALV LSDSVEYMVS DPVASKFMKG VASVLEREKL NLLLFSGSSD SVNAVADFVD GFICYGRPRN ALLAEQLKQV KKKVVTVDFD IHRNASVSID NKLAAYEVAK LALKSPTDQV AILGLRLLDT HLTCRVYDLN LLEIDMSIAH QRLQGYLQAI EETGVTLGND RIWNIPESNA EYARIAAKEA LNSTPRPNVF LCMSDLIALS VLGEAQAMGL AIPEDIRVVG FDGIDEATRS NPPLTTVYQY SEQKGQMAAQ MFIDDAVHAQ VLGYELRLGK SC
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