| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0062 |
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| Symbol | |
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| ID | 4250941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 71544 |
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| End bp | 72992 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638116604 |
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| Product | major facilitator transporter |
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| Protein accession | YP_732200 |
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| Protein GI | 113968407 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000000690762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCCCAG CGTCTGCTTC GTCCCCTCAT GAGCCTCTGC CCACCTCGGT TTTTCTGGCG
ATTTTCTCCG CCGTATTCTT ACCCATGTTT CTGGCGGCGG TCGATCAAAC CTTACTCGCT
ACCGCCACCC CAGCGATAGT GGAAGATCTT GGCGGCCTCA GGCAAGCCTC GTGGATCACT
ATCGGTTATA TGCTGGCGAT GGCGGCCAGT GTGCCTATTT ACGGCTGGCT AGGGGATAAC
TATGGCCGCG CTAAAATTCT GATGATCGCC TTAGTGGTGT TTGCGTTGGG TTCAATTGTT
TCCGCCAGTG CTGGGACTAT GGACCATATG ATTGCTGGCC GGATCCTCCA AGGCCTCGGT
GGTGGCGGGC TGATGAGTCT GTCCCAATCC CTTGTGGGGG AATTGGTGCC TATACGGCAA
AGGGCACGTT TTCAGGGCTA TTTTGCCGCT ATGTTTACCC TCGCCAGTGT TGGCGGCCCT
GTGATTGGTG GCTTTGTGGT GCATGCCTAT TCTTGGCACT GGTTATTTTG GGCGAATATT
CCTTTGGTCA TGCTGGCGGT TTGGCGGCTT AATCGCCTGC ATAAACAGAG TGTTAAACCG
GTGCGGCAAG GGCGGTTTGA CTTACTCGGC GTACTGTTAT TTCCCACGAT CATCACAGCG
CTGCTGTATT GGTTGTCCGT GGCGGGGCAA GACTTTGCTT GGCTATCGGC CACAAGCTTA
GGCTTTATGG GATTTATCTG TGTGGGTGCC CTTGTGCTGT TGTGGTGGGA ACGTCGGCGT
GAGAGTCCTT TCTTACCGCT GGATTTACTC GCCAATAAAG CCATTTATAT GCCGCTCTTC
ACGGCCGCGC TGTTTGCCGC CTGCCTGTTT GCGATGATCT TCTTTTTACC CATTTACTTG
CAGGTCGGTC TGCACACCAA TCCGGCCAAA ACGGGCTTGC TGCTGATGCC AATGACCTTT
GGCATTGTGA CGGGCTCCAC CATCGCTGGC AGGCTGTTGA GTCGGGATGT GGCGCCTAAA
TGGTTGCCGA CCTTCGGCAT GGGCTTGGCC TTTATCGGTT TGCTCTTAAT CGGTTTAGTG
CCGCCGAATG CGAATCTTAT CGGTGCTTTA GGTGTGCTGG TGGGCATTGG TTTAGGGACT
GTGATGCCCA GCGTGCAGCT AGTGGTGCAG AGCGTGTCGG GCAAGGCGCG TTTAAGCCAA
ATCACCGCTA TGGTGTCCTT GAGTCGTTCC ATGGGCGCGG CAATTGGTAC GGCTTTATTC
AGTCTGTTGC TATATGGCTT ATTGCCGCTC GACGGGGCAC AGGTGGGAAT TGCGGCAATA
AAGCAGTTAC CCATAGAGGT TGTGCATCAC GCTTTCCAAT GGGGTTTTAT CGCGGCGGCA
CTGGTGGCGC TCAGCTCGGC GATTGTGGGT TATTTGTCGC CTGCGACTGC GCTTAGGGAT
CATGAGTAG
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| Protein sequence | MTPASASSPH EPLPTSVFLA IFSAVFLPMF LAAVDQTLLA TATPAIVEDL GGLRQASWIT
IGYMLAMAAS VPIYGWLGDN YGRAKILMIA LVVFALGSIV SASAGTMDHM IAGRILQGLG
GGGLMSLSQS LVGELVPIRQ RARFQGYFAA MFTLASVGGP VIGGFVVHAY SWHWLFWANI
PLVMLAVWRL NRLHKQSVKP VRQGRFDLLG VLLFPTIITA LLYWLSVAGQ DFAWLSATSL
GFMGFICVGA LVLLWWERRR ESPFLPLDLL ANKAIYMPLF TAALFAACLF AMIFFLPIYL
QVGLHTNPAK TGLLLMPMTF GIVTGSTIAG RLLSRDVAPK WLPTFGMGLA FIGLLLIGLV
PPNANLIGAL GVLVGIGLGT VMPSVQLVVQ SVSGKARLSQ ITAMVSLSRS MGAAIGTALF
SLLLYGLLPL DGAQVGIAAI KQLPIEVVHH AFQWGFIAAA LVALSSAIVG YLSPATALRD
HE
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