Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0060 |
Symbol | |
ID | 4250939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 70202 |
End bp | 70939 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638116602 |
Product | hypothetical protein |
Protein accession | YP_732198 |
Protein GI | 113968405 |
COG category | [R] General function prediction only |
COG ID | [COG0730] Predicted permeases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.128142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000546938 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTTAACAG ACCCTGTTTT TTGGCTGGTG GCGATTCCAG CGGTGTTGAT CACTGGGATC TCTAAATCAG GTTTTGCCGG CGGCGTCGGT GGCTTGACCG TGCCCCTGTT AGCGCTGGCC ATTAGCCCGG CAACCGCGGC GGCAATCATG TTGCCATTGC TGATTTATAT GGATTTTTTA AGTGTTCGCT CCTGGTGGGG CCAACATAAC CCTCGCCAAT TATGGATCCT TTTACCCGCG GCGATTGTGG GCATAGGCAT GGCCTATTGG TTGTTCGACC GCTTAAACGA AGATTATTTA CGGGCGATTT TAGGCTGTGT TTCCTTAGGT TTTGGTCTTT ATGGCTTGAT ATTAGGGGAT AAAACCCAAG CTAAGCCTTC GCCACTCGTG GGGCGGCTTT GTGGCTTAAC CGCAGGCTTT ACCAGCTTTG TGGCCCATGC GGGCGGGCCA CCACTGAATG CCTATTTGCT GCCGTTACGC TTGGCCAAGC CAGAGTTTTT AGCCACGGCA GTGGTATTTT TTGCGGTGGT GAATCTGGTT AAGTTGGTAC CTTACAGTCT GCTCGGGCAA ATTAACCAAG GTAACATTCT GATTTCGCTA TTACTTGCGC CTCTGGCTTG GTTAGGCGTA AAACTGGGGT TGGCGATCCA AGATAAGATC AGCGATAGGT TGTTTAAACG CATCATCTTG ATTTTAATGG TGCTGGTGGG TATTCGTTTA TTGTGGACGG CGTTATAG
|
Protein sequence | MLTDPVFWLV AIPAVLITGI SKSGFAGGVG GLTVPLLALA ISPATAAAIM LPLLIYMDFL SVRSWWGQHN PRQLWILLPA AIVGIGMAYW LFDRLNEDYL RAILGCVSLG FGLYGLILGD KTQAKPSPLV GRLCGLTAGF TSFVAHAGGP PLNAYLLPLR LAKPEFLATA VVFFAVVNLV KLVPYSLLGQ INQGNILISL LLAPLAWLGV KLGLAIQDKI SDRLFKRIIL ILMVLVGIRL LWTAL
|
| |