Gene Shewmr4_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0060 
Symbol 
ID4250939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp70202 
End bp70939 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content50% 
IMG OID638116602 
Producthypothetical protein 
Protein accessionYP_732198 
Protein GI113968405 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.128142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000546938 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTAACAG ACCCTGTTTT TTGGCTGGTG GCGATTCCAG CGGTGTTGAT CACTGGGATC 
TCTAAATCAG GTTTTGCCGG CGGCGTCGGT GGCTTGACCG TGCCCCTGTT AGCGCTGGCC
ATTAGCCCGG CAACCGCGGC GGCAATCATG TTGCCATTGC TGATTTATAT GGATTTTTTA
AGTGTTCGCT CCTGGTGGGG CCAACATAAC CCTCGCCAAT TATGGATCCT TTTACCCGCG
GCGATTGTGG GCATAGGCAT GGCCTATTGG TTGTTCGACC GCTTAAACGA AGATTATTTA
CGGGCGATTT TAGGCTGTGT TTCCTTAGGT TTTGGTCTTT ATGGCTTGAT ATTAGGGGAT
AAAACCCAAG CTAAGCCTTC GCCACTCGTG GGGCGGCTTT GTGGCTTAAC CGCAGGCTTT
ACCAGCTTTG TGGCCCATGC GGGCGGGCCA CCACTGAATG CCTATTTGCT GCCGTTACGC
TTGGCCAAGC CAGAGTTTTT AGCCACGGCA GTGGTATTTT TTGCGGTGGT GAATCTGGTT
AAGTTGGTAC CTTACAGTCT GCTCGGGCAA ATTAACCAAG GTAACATTCT GATTTCGCTA
TTACTTGCGC CTCTGGCTTG GTTAGGCGTA AAACTGGGGT TGGCGATCCA AGATAAGATC
AGCGATAGGT TGTTTAAACG CATCATCTTG ATTTTAATGG TGCTGGTGGG TATTCGTTTA
TTGTGGACGG CGTTATAG
 
Protein sequence
MLTDPVFWLV AIPAVLITGI SKSGFAGGVG GLTVPLLALA ISPATAAAIM LPLLIYMDFL 
SVRSWWGQHN PRQLWILLPA AIVGIGMAYW LFDRLNEDYL RAILGCVSLG FGLYGLILGD
KTQAKPSPLV GRLCGLTAGF TSFVAHAGGP PLNAYLLPLR LAKPEFLATA VVFFAVVNLV
KLVPYSLLGQ INQGNILISL LLAPLAWLGV KLGLAIQDKI SDRLFKRIIL ILMVLVGIRL
LWTAL