Gene Shewmr4_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0055 
Symbol 
ID4250934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp63908 
End bp64831 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content56% 
IMG OID638116597 
Productpirin domain-containing protein 
Protein accessionYP_732193 
Protein GI113968400 
COG category[R] General function prediction only 
COG ID[COG1741] Pirin-related protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.41022e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGAAG TTCAAGCACA GTTTTACGGC GGCCCAAGGG AATGCCCCGT CGAAGATGGG 
CGGATCCAAA TCCAGCATAT TGCTCCCAAA ATCAGTGATG TGGGCGGGAT ACCCGTGGCG
CGGGCGATTC CACAAAAACC GCGTCGACTC ATAGGACCAT GGTGTTTTCT GGATCATATT
GGCCCAGTCA CCGACGGCCC CTTAATGAAT GTGGGCGAGC ATCCCCATAT TGGCCTTCAA
ACCTTCACTT GGATGCTGGA GGGGGAAATC ATGCACAGGG ACAGCCTAGG TAGCGCCCAA
GTGATCCGCC CAAAGCAAGT CAATCTGATG ACCGCTGGCC ATGGTATCGC CCACACCGAA
GAGTCCGTCG AAGGTCATCG CACTATGCAT GCGGTGCAGC TATGGATTGC GCTGCCGCTG
GAGCACAAAG ACACAGCCCC TAGATTCGAC CATTATCCCC AGCTGCCCAC TTGGCAGGAG
GCGGGCGTCG AATTCACCCT ATTGATTGGC TCGTGGAAGG ATAAGCAAGC GCCCACGCTG
CACTTTTCAC CAATCGTCGC GCTCGATATC TTCGCCGCAG AGGCGACACA ACTGACGCTC
AGGCTAGACC CGCGATTTGA ATATGGCCTA ATGCCCCTCG AGGGCCGATT CGATATCGAC
GACGAGGCCT TTGATAACAA TAACCTCGCT TATCTTGGCA TGCTGCGCGA GAGTGTGACG
CTCGAGCTTC ACCCTGGCGC ACGTTTACTG CTGATTGGCG GCGCGCCCCT CGCCGACACC
GTCAGTATTT GGTGGAATTT TGTCGGCCAC AGTAAGGAAG ATATCGCCAG CGCCCAAGCC
GATTGGGAGG CCAAGTCCCC ACGTTTTGCC ACAGTGCCGG GTTATAACGG CAAACGCTTA
ATGCCGCCGA CCATCCCTTG GTAA
 
Protein sequence
MSEVQAQFYG GPRECPVEDG RIQIQHIAPK ISDVGGIPVA RAIPQKPRRL IGPWCFLDHI 
GPVTDGPLMN VGEHPHIGLQ TFTWMLEGEI MHRDSLGSAQ VIRPKQVNLM TAGHGIAHTE
ESVEGHRTMH AVQLWIALPL EHKDTAPRFD HYPQLPTWQE AGVEFTLLIG SWKDKQAPTL
HFSPIVALDI FAAEATQLTL RLDPRFEYGL MPLEGRFDID DEAFDNNNLA YLGMLRESVT
LELHPGARLL LIGGAPLADT VSIWWNFVGH SKEDIASAQA DWEAKSPRFA TVPGYNGKRL
MPPTIPW