Gene Shewmr4_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0053 
Symbol 
ID4250668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp61944 
End bp62633 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content52% 
IMG OID638116595 
Producttwo component transcriptional regulator 
Protein accessionYP_732191 
Protein GI113968398 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.76822e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTTATA AGATCTTAGT GGTGGATGAT GAGCCGCAAA TCCATACCTT TATGCGGATC 
TCACTCGAAG CGGAAGGCTT TGAATACTTA AGCGCCACCA GCATAGCCAC GGCGCTTAAA
CAATACCAAA GCCACCAGCC GCACCTTATT GTGCTCGACC TCGGCCTGCC CGATGGCGAT
GGTATCGAGT TGCTCCATGG GCTGCGCCAG CAGGATAAGA CCCCAGTGCT GGTGCTCACC
GCTCGCGATC AGGAGGAAGA AAAAATCCGT CTGCTCGAGG CTGGTGCTAA CGATTATCTG
AGTAAGCCCT TTGGCATCAG GGAATTAATC GTGCGTATCA AGGTATTAGT CCGTGATCTT
GTGGATACCT CAAGCACCAT CGATATGCTG CAATTTGGCC CGCTCACCCT ACAAAAGAGC
AGCCATCAAT GCTGGCTGAA TCAACAGGAA GTGGCGCTTA CCAAGAAGGA ATTTGCCCTG
CTCGCCCAAC TCATGTCCCA CCCAGGGCAA TTACTGAAAC AGAGCGAACT GCTGCGCAAT
ATTTGGGGCG AGACTCACCA GGAAGATAGC CACTATCTGC GGATTTTAGT CCGCCAACTG
CGTAAAAAGC TTAACGACAG CGACGAACAA CAACTGATCA AAACCGAGCC CGGCTTAGGG
TATCGACTCA CCGACCTCGG CCCGCCCTAG
 
Protein sequence
MAYKILVVDD EPQIHTFMRI SLEAEGFEYL SATSIATALK QYQSHQPHLI VLDLGLPDGD 
GIELLHGLRQ QDKTPVLVLT ARDQEEEKIR LLEAGANDYL SKPFGIRELI VRIKVLVRDL
VDTSSTIDML QFGPLTLQKS SHQCWLNQQE VALTKKEFAL LAQLMSHPGQ LLKQSELLRN
IWGETHQEDS HYLRILVRQL RKKLNDSDEQ QLIKTEPGLG YRLTDLGPP