Gene Shewmr4_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0052 
Symbol 
ID4250667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp61201 
End bp61899 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content53% 
IMG OID638116594 
ProductTrkA domain-containing protein 
Protein accessionYP_732190 
Protein GI113968397 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.56349e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACATT TTACTGTCAT CGGATTAGGC CGCTTCGGCG TTGCCGCGAG CCTCGAACTC 
ATCCACTTAG GCCACACGGT TACCGGTGTC GATAGCGACC CAAAAATCGT TGAAAAATAT
GTAGAAAGTC TTACCGAAGC GGTGATTTGC GACTGCGCCG ATGAGGCGTC GCTGCGCGAA
CTCGATCTGA CCAACTGCGA GGCAGTGCTG GTCGCTATCG GTGAGGATAT GCAGTCTAGC
CTGCTGTGCA CGCTGGCACT GAAAAACCTC GGCGTGCAGA CGATTTGGGT CAAGGCCAGC
ACCATGGCGC ACCATACCAT AGTGTCGAAA CTCGGCGTTG CCCGCATTAT TCATCCCGAG
GAGGAAATGG GGATCCGCGT CGCCCAGTCG CTTAACTATC CTATGGTGAA TAACTTTCTC
GCCATCGGCG ATGGGCTTTA TATTGTTGAA ATCCATATTA AAGCCCAGTT GCATCACACC
ACTGTTGGCC AACTGCTCGG GAGCTTGCAG GAGCACAGCA CCGATGAGCA AACCAATGTC
CCACGCAATC CTAAGGGCAA GATAGCGGCG CTGATGGTTA AACGTGAGCA CAACGTATTT
AGCAAGATTG ATAGCGACTT TAGCCTGCAC ACAGAGGATA CCCTATTCCT CTGCGGTAGC
CGTGCCGAGT TAAAACAGCT CGCACCAAGG TTGGTGTAA
 
Protein sequence
MAHFTVIGLG RFGVAASLEL IHLGHTVTGV DSDPKIVEKY VESLTEAVIC DCADEASLRE 
LDLTNCEAVL VAIGEDMQSS LLCTLALKNL GVQTIWVKAS TMAHHTIVSK LGVARIIHPE
EEMGIRVAQS LNYPMVNNFL AIGDGLYIVE IHIKAQLHHT TVGQLLGSLQ EHSTDEQTNV
PRNPKGKIAA LMVKREHNVF SKIDSDFSLH TEDTLFLCGS RAELKQLAPR LV