Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0052 |
Symbol | |
ID | 4250667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 61201 |
End bp | 61899 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638116594 |
Product | TrkA domain-containing protein |
Protein accession | YP_732190 |
Protein GI | 113968397 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0569] K+ transport systems, NAD-binding component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000156349 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCACATT TTACTGTCAT CGGATTAGGC CGCTTCGGCG TTGCCGCGAG CCTCGAACTC ATCCACTTAG GCCACACGGT TACCGGTGTC GATAGCGACC CAAAAATCGT TGAAAAATAT GTAGAAAGTC TTACCGAAGC GGTGATTTGC GACTGCGCCG ATGAGGCGTC GCTGCGCGAA CTCGATCTGA CCAACTGCGA GGCAGTGCTG GTCGCTATCG GTGAGGATAT GCAGTCTAGC CTGCTGTGCA CGCTGGCACT GAAAAACCTC GGCGTGCAGA CGATTTGGGT CAAGGCCAGC ACCATGGCGC ACCATACCAT AGTGTCGAAA CTCGGCGTTG CCCGCATTAT TCATCCCGAG GAGGAAATGG GGATCCGCGT CGCCCAGTCG CTTAACTATC CTATGGTGAA TAACTTTCTC GCCATCGGCG ATGGGCTTTA TATTGTTGAA ATCCATATTA AAGCCCAGTT GCATCACACC ACTGTTGGCC AACTGCTCGG GAGCTTGCAG GAGCACAGCA CCGATGAGCA AACCAATGTC CCACGCAATC CTAAGGGCAA GATAGCGGCG CTGATGGTTA AACGTGAGCA CAACGTATTT AGCAAGATTG ATAGCGACTT TAGCCTGCAC ACAGAGGATA CCCTATTCCT CTGCGGTAGC CGTGCCGAGT TAAAACAGCT CGCACCAAGG TTGGTGTAA
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Protein sequence | MAHFTVIGLG RFGVAASLEL IHLGHTVTGV DSDPKIVEKY VESLTEAVIC DCADEASLRE LDLTNCEAVL VAIGEDMQSS LLCTLALKNL GVQTIWVKAS TMAHHTIVSK LGVARIIHPE EEMGIRVAQS LNYPMVNNFL AIGDGLYIVE IHIKAQLHHT TVGQLLGSLQ EHSTDEQTNV PRNPKGKIAA LMVKREHNVF SKIDSDFSLH TEDTLFLCGS RAELKQLAPR LV
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