Gene Shewmr4_0051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0051 
Symbol 
ID4250666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp59838 
End bp61199 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content50% 
IMG OID638116593 
ProductTrkH family potassium uptake protein 
Protein accessionYP_732189 
Protein GI113968396 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.43033e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGTTCAAT GGCATCCTTC GCTCACCCTA GAGCACACAC CTAAAAGCGG TAAAAAACTC 
TTTGGCGCGC CGCCCTTTAT CTTAAGTGTC AGTTTTGCTC TGCTGATCTT ACTTGGCACT
TGCTTGCTTA AACTGCCTAT CGCCACCGAG TCGCCTATTA CTTGGCTGCA AAGCCTCTTT
ACCGTGACCT CGGCGGTGAC GGTCACAGGG CTTGTGGTCG TCGATACTGG CAGTATGTTC
ACGCCCTTTG GCCAAGTGAT TATCGCGCTG TTAATTCAAT GCGGCGGCCT AGGCTTGATG
ACCTTTGCCA TAGTCACGCT AATAGCGCTG GGCGGTAAGA TAGGTTTCTT GCAGCAAACA
GTGGCGAAAG AAGCGTTTAA TCAAACCGAT ACCTCTACCT TAGTCTCGAC TGCTAAGGCC
GTACTGGTGT TTTCGCTATT GGTTGAAGCC GTGGGTATGC TGATTTTATC TGTCTACTGG
AGCGGCGAAT TGGGTTGGCA AACTAGCTTA TTTCATGGCT TCTTTTATAC TATTAGCGCC
TTTAATAACG CGGGTTTTGC CCTAAGCCCA GATAGCTTAA TCCCCTATGT GGCCGACCCA
GTCGTTAACC TCACCATCAC AGGTTTATTT ATTGTGGGCG GCCTTGGGTT TTCGGTGTGG
ATTGACCTTA AGCGCAATAA ACGTTGGTCG AAACTCACCG TCTACAGCCG CATGATGATT
ACTGGCACCA TACTGATCAA TGCCGTGGCC GTGATAGCCA TTTACCTGAT TGAATACAAC
AACCCCAACA CCCTCGCGCC CTTAAGCGAG CTCGGCAAAT GGTTGGCCTC TTGGTTTCAA
GCCGTGACCC CGCGCACCGC AGGCTTTAAC ACCTTGCCCA TAGACCAACT CGAGGATGGT
TCCACCCTAT TGATTTTAGT GCTGATGTTT ATCGGCGGCG GCTCCCTCAG CACCGCCAGC
GGCATTAAAG TCGTGACCTT TATGGTGCTT ATTCTCGCCA CCTACGGCTA TTTACGCCGC
GATGAAGCAG TGTATGTGTT TAAGCGGGAA ATCCCCAAAG ATACCGTCAG CAAAGCCTTA
GCGCTAACCA TCATCTCTTT GGTCGTATCT TGGCTGGCCA TCTTCATATT GGTATTAAGC
GAGAAAGCGC CGTTAGTCGA TATCGTCTTC GAGGCCATAT CCGCACTGGG CACAGTCGGT
TTATCCCGCG GTTTGACAGG TAACTTAACT AGCCTAGGCC AAGCCATCAT CATCTTTATG
ATGTTCATGG GTCGCCTCGG CCCACTGATG TTGGCCTACT TCCTTGCCAA CCCAAGGGTA
AAAAAGCTGC GCTATGCAGA AACCAAATTG GCAATTGGGT AA
 
Protein sequence
MVQWHPSLTL EHTPKSGKKL FGAPPFILSV SFALLILLGT CLLKLPIATE SPITWLQSLF 
TVTSAVTVTG LVVVDTGSMF TPFGQVIIAL LIQCGGLGLM TFAIVTLIAL GGKIGFLQQT
VAKEAFNQTD TSTLVSTAKA VLVFSLLVEA VGMLILSVYW SGELGWQTSL FHGFFYTISA
FNNAGFALSP DSLIPYVADP VVNLTITGLF IVGGLGFSVW IDLKRNKRWS KLTVYSRMMI
TGTILINAVA VIAIYLIEYN NPNTLAPLSE LGKWLASWFQ AVTPRTAGFN TLPIDQLEDG
STLLILVLMF IGGGSLSTAS GIKVVTFMVL ILATYGYLRR DEAVYVFKRE IPKDTVSKAL
ALTIISLVVS WLAIFILVLS EKAPLVDIVF EAISALGTVG LSRGLTGNLT SLGQAIIIFM
MFMGRLGPLM LAYFLANPRV KKLRYAETKL AIG