Gene Shewmr4_0049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0049 
Symbol 
ID4250664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp56321 
End bp57505 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content52% 
IMG OID638116591 
Producthypothetical protein 
Protein accessionYP_732187 
Protein GI113968394 
COG category[R] General function prediction only 
COG ID[COG2081] Predicted flavoproteins 
TIGRFAM ID[TIGR00275] flavoprotein, HI0933 family 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.78391e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAACATC ATGATGTAAT TATTATCGGA GCCGGCGCCG CAGGATTAAT GTGTGCTGCA 
ACAGCGGGTT ACCGAGGTCG TGATGTACTG GTACTCGATA ATGCCAAGCA GGCTGGGCGT
AAAATCCTTA TCAGCGGTGG CGGCCGTTGT AACTTTACCA ATCTGAAAGT CGAACCCGCC
AACTTTATCT GTGGCAACCC GCACTTTGTC AAATCCGCAT TGGCGCGTTA TCCGTCGCAG
CAGTTTATCG AACTGGTTGA GCGCCACGGC ATTGAATACC ACGAGCGTGA CCATGGCCAG
CTGTTCTGTA ATGACTCGGC CAAAGAGATA GTCACTATGC TGCTGACCGA ATGTGAGTGG
GCTGGCGTGA GCATTAAACT TCGCACCGAT ATTCTGGCGG TGAGCAAAAC CGAGGCAGGC
CGCTTTGAGC TAAACACCTC AAATGGCGAG TTAAGTTGCG ACTCCTTAGT GATCGCCACC
GGCGGTTTAT CAATGCCAAA ACTCGGCGCC ACACCCTACG GCTATCAATT GGCCGAGCAG
TTTGGGCTTA AGGTGTTGCC AACTCACGCG GGTCTGGTGC CTTTTACTTG GCACAGCGAA
GATAAAATTC GCTTCGAACC GCTGTCGGGC ATTGCCGTAC CGAGCCGTAT TACCGCCAAA
GATGGCACCG CCTTTAGCGA AGCCTTACTC TTTACCCACA GAGGCTTATC TGGCCCCGCT
ATTTTGCAGA TTTCCAACTA CTGGAAAGCG GGCGAAACCA TAGAAATCAA TCTATTACCC
AATATGGATG CCGCGCAGGC TTTAGAGCAA CAACTGGCCG CACATCCTAA ACAGAGTCTG
CGTAATACCT TAAGCCAGTG GTTACCTAAG CGGCTGGTGG AAGTGTTATT CGATGAAGCT
TTACTCAACA AAGCCTTAAA TCAGCTGGTT CATGCAGAGC GCGCCAAGTT AGTCGACGAT
CTGCACCGCT GGACAGTCTT AATGAATGGC ACGGAAGGTT ATCGCACCGC CGAAGTGACA
CTCGGCGGCG TGGATACCCA TGAACTCTCC TCCAAAACCA TGGAAGCCAT AAAAGTCCCC
GGCCTATTTT TTATCGGCGA AGTGATGGAT GTCAGCGGTT GGTTAGGCGG GTTTAACTTC
CAATGGGCCT GGGCATCTGG TGTGGCCGCA GGAAGGGTTG TGTGA
 
Protein sequence
MKHHDVIIIG AGAAGLMCAA TAGYRGRDVL VLDNAKQAGR KILISGGGRC NFTNLKVEPA 
NFICGNPHFV KSALARYPSQ QFIELVERHG IEYHERDHGQ LFCNDSAKEI VTMLLTECEW
AGVSIKLRTD ILAVSKTEAG RFELNTSNGE LSCDSLVIAT GGLSMPKLGA TPYGYQLAEQ
FGLKVLPTHA GLVPFTWHSE DKIRFEPLSG IAVPSRITAK DGTAFSEALL FTHRGLSGPA
ILQISNYWKA GETIEINLLP NMDAAQALEQ QLAAHPKQSL RNTLSQWLPK RLVEVLFDEA
LLNKALNQLV HAERAKLVDD LHRWTVLMNG TEGYRTAEVT LGGVDTHELS SKTMEAIKVP
GLFFIGEVMD VSGWLGGFNF QWAWASGVAA GRVV