Gene Shewmr4_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0047 
Symbol 
ID4250662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp54576 
End bp55061 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content47% 
IMG OID638116589 
Productpreprotein translocase subunit SecB 
Protein accessionYP_732185 
Protein GI113968392 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1952] Preprotein translocase subunit SecB 
TIGRFAM ID[TIGR00809] protein-export chaperone SecB 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.28873e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTGAAG TAGCAAACAA CGAACAACAA GCCCCACAAT TCAACATCCA ACGTGTTTAC 
ACTAAAGATG TTTCTTTCGA AACACCTAAC AGCCCAGCTG TATTCCAAAA AGAATGGAAT
CCAGAAGTTA AGTTAGATTT AGACACTCGC AGCGCTAAAT TAGCCGACGA CGTATACGAA
GTGGTTCTGT CTTTGACTGT GACTGCACAA AACGCTGGCG AAACTGCATT CCTGTGTGAA
GTACAACAAG CTGGTATCTT CTCAATCGCA GGTCTGACTG AGCCACAACT GGCTCACTCA
TTAGGTGCAT ACTGCCCTAA CATCCTATTC CCATATGCGC GTGAAGCTGT AGGTAGCTTA
GTGGGTCGTG GTACTTTCCC ACAACTGAAC TTAGCTCCAG TAAACTTCGA CGCTCTGTTC
GCACAATACG TGCAACAACG TCAAGCCGCA GCAGCTGCAC CAGCAGCCGA AGAAGCTAAC
GCTTAA
 
Protein sequence
MAEVANNEQQ APQFNIQRVY TKDVSFETPN SPAVFQKEWN PEVKLDLDTR SAKLADDVYE 
VVLSLTVTAQ NAGETAFLCE VQQAGIFSIA GLTEPQLAHS LGAYCPNILF PYAREAVGSL
VGRGTFPQLN LAPVNFDALF AQYVQQRQAA AAAPAAEEAN A