Gene Shewmr4_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0031 
Symbol 
ID4250717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp35929 
End bp36945 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content49% 
IMG OID638116570 
ProductDNA protecting protein DprA 
Protein accessionYP_732170 
Protein GI113968377 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[L] Replication, recombination and repair 
COG ID[COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 
TIGRFAM ID[TIGR00732] DNA protecting protein DprA 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.912099 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00525591 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGTGG ACGACCTCAG GCAAAGATTG GAGCATGAGA GGCACTCGCT CCCTTTGTCT 
GACAATCTAC TCCATAGCTT AGTCATTGAT TATCAAAGGG TCGATGCTGC CCTCGAATGG
CAACAGCAGT CTGAACTACA CCACCTCGTT TGTTTTACCG ATCCCCTTTA TCCTCCATTA
CTCAAACAGT TACCCGATCC TCCAAGCGTC TTATTTATCA AAGGATGTGT TGAGGCGCTG
TTGTTCCCAT CGCTTGCGAT AGTGGGGAGT CGTAATGCGT CTCCCGGTGG ATTACAGGTT
GCTTATCAGT TAGCTCGAGA GATGTCCGCG CTAGGATTTA GTATCTGTAG TGGCATGGCG
ATGGGGATAG ATGGTGCGGC CCATAAAGCC TGTGTTGACC ACGGAGGCAG AACGCTTGCG
GTGCTGGGAA CCGGGATTGA TATTATTTAT CCGCGTCGAC ATAAGCAGCT TTATGAGGAT
ATTCAGCACC AAGGCTGTAT AATAAGCGAG TTTTGGCCGG ATATCGGGCC TTTTGCGGGC
AATTTCCCGA AACGAAACCG CATTATTAGC GGTCTTTCTT TAGGTACGCT GGTGGTTGAA
GCTTGCCGTA AGAGTGGTTC ACTCATCACC GCTAGGTTGG CCATGGAGCA GGGGCGTGAG
GTCTTTGCGG TTCCGGGCTC GATTCTCGGC GGCTTTCATC AAGGCTGCCA TGATTTATTA
AGGGATGGGG CAAAACTTGT GGAGAGTGCG GCCGATATAG TGGAAGAGTT GGTAAGTTTG
ACGGCTTTTC ACCTTGAAGA AGTCAACACT CGCCACCATA TACAGCAAGG TGAGATTTGT
GATTTGCCAT TTTCATCGCT GTTAGCTAGT GTAGGTTATG AAACTACAAC AATTGATGCT
GTAGTCGAAC ATAGTGGGAA AACGATAGAT CTGGTGTTAG AACAAATGCT TGAACTTGAG
TTGCAAGGTT GGGTTGTTGC AGTACCCGGT GGTTACGTCA GAGTAAAGAG GAGCTAG
 
Protein sequence
MDVDDLRQRL EHERHSLPLS DNLLHSLVID YQRVDAALEW QQQSELHHLV CFTDPLYPPL 
LKQLPDPPSV LFIKGCVEAL LFPSLAIVGS RNASPGGLQV AYQLAREMSA LGFSICSGMA
MGIDGAAHKA CVDHGGRTLA VLGTGIDIIY PRRHKQLYED IQHQGCIISE FWPDIGPFAG
NFPKRNRIIS GLSLGTLVVE ACRKSGSLIT ARLAMEQGRE VFAVPGSILG GFHQGCHDLL
RDGAKLVESA ADIVEELVSL TAFHLEEVNT RHHIQQGEIC DLPFSSLLAS VGYETTTIDA
VVEHSGKTID LVLEQMLELE LQGWVVAVPG GYVRVKRS