| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0030 |
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| Symbol | |
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| ID | 4250716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 34721 |
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| End bp | 35845 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638116569 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_732169 |
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| Protein GI | 113968376 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.772252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00540943 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACCGCA CCATGAAACG GCTAATTTTA CTTGCGTTAA TGACATTTAA TTGCACGTTG
GTTTCCGCTG ATACTCTCAC GCTGAAAGCA GGGCATCCCG AGTCATATGT GGTAAAGAAG
GGCGATACCC TTTGGGATAT CTCGGCCACC TTTTTAAATG ACCCTTGGAA GTGGACACGT
TTATGGGATG TTAACCCCCA AATTGCTAAC CCTCATTTAA TTTATCCCGG CGATCAGCTC
ACTTTAGTCT TTATCGATGG TCAACCCCGA TTAGTGCGTA ATGGCGCTAA CGAGGGAAAA
CCCCATATTC GCAAAACCCC TGAGGGACGC GTGATTGCTA AGAGCAATGC GGTGCCTGCG
GTTGATTTAG CGTTAATCCA AAACTATCTG GTGCAAAACC GTGTGGTCGA TGCCGACTGG
TTTGCACAGC AACCTATGGT GCTCGCGGGT GAAAGTCCTT CACGTCACCA TGTGGTTGGC
GATGTGATTT ATATCGATAG CGAACTGCCT TTAAACCAAA AGCTGGGTAT GTATGAACGC
GGTCGTGACT TCTTCAACAA ACAAACGGGC GAAGCCTTAG GACAAGAAGC GATTCTGGCG
TCTACCGGCC AAGTTATTGA ATCAGGCAAA GTGTCTAAGG TTAAAATCCT CAGTAACTAC
CGTGAAACCA AGGCGGGTTT TAGGGTGCTA CCTATGGAAG ATGAAGCCTT AATGTCAGCC
TATTTTACGC CAAAACCTGC TGAGATTAAG ACGCCGGCGA CCGTACTAGC TATTGAGTCG
AAAATGCGTG AGGCGGGTAA GCTCAATGTG GTGTACCTAG ATAAAGGCAC GCAGGATGGT
GTTGAGCCGG GTGAAGTGTT CTCCATTTAC CGCGATGGCG AAGAGATAGT GATTAATAAC
GATGGCCAAC CCGTACCTAC GACCGAGCGC ACCGCCTATG ACAATGTGGT GGCGTCACTG
TCGTCAGATC GCGCCATCAA GATGCCCGAT ATTTACCATG GCAAACTCTT AGTCTTTAAA
GTGTTTGATA AAGCGAGCTT AGGTTTGATT GTCTCGACTG AACGTTCTGT ACGTGTCGAC
GATAAATTAA TTGCGCCAGA CTCCTTAGCC TTTAGAGGTG AATAA
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| Protein sequence | MDRTMKRLIL LALMTFNCTL VSADTLTLKA GHPESYVVKK GDTLWDISAT FLNDPWKWTR
LWDVNPQIAN PHLIYPGDQL TLVFIDGQPR LVRNGANEGK PHIRKTPEGR VIAKSNAVPA
VDLALIQNYL VQNRVVDADW FAQQPMVLAG ESPSRHHVVG DVIYIDSELP LNQKLGMYER
GRDFFNKQTG EALGQEAILA STGQVIESGK VSKVKILSNY RETKAGFRVL PMEDEALMSA
YFTPKPAEIK TPATVLAIES KMREAGKLNV VYLDKGTQDG VEPGEVFSIY RDGEEIVINN
DGQPVPTTER TAYDNVVASL SSDRAIKMPD IYHGKLLVFK VFDKASLGLI VSTERSVRVD
DKLIAPDSLA FRGE
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