Gene Shewmr4_0026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0026 
SymboltrkA 
ID4250712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp30403 
End bp31812 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content52% 
IMG OID638116565 
Productpotassium transporter peripheral membrane component 
Protein accessionYP_732165 
Protein GI113968372 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.570638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00237688 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATTA TCATATTAGG TGCGGGTCAA GTCGGGGGAA CCTTGGCCGA AAATTTGGTG 
GGTGAAAACA ACGATATCAC CATAGTCGAT AGCGACAAAT CCAGATTACG CGCCCTGCAG
GATAAATATG ACCTTCGCGT CGTGGCGGGC CACGGTGCCC ACCCCGATGT ACTGAAAGAG
GCTGGCGCCG AAGATGCCGA CATGCTGATT GCTGTGACGA ACAGCGATGA ATGCAACATG
GTTGCCTGCC AGATGGCCTA CAGCCTATTT GGTACACCGA CTAAAATCGC CCGTATTCGC
TCCGAACCTT ATCTGGCGAT GCGCGATAAA TTATTTATCG ACAGTGAAAC CAAAAATAGT
GAGGGGCGCC CTCGCGGTGG TTTTGTGATC GATGAGCTTA TCGCACCTGA GCAGTTAGTA
ACCGCTTACA TTCAACGTTT GGTTGAATAT CCAGGGGCGC TGCAAGTGCT CGAATTTGCC
GAAGGTCGCT TAAGTTTGGT TGCGGTTCGC GCCTATTACG GCGGCCCTTT AGTCGGTAAT
GCCTTGGCCG CGCTTCGCGA GCATATGCCA AATATTGATA CCCGGGTGGC GGCGATTTTC
CGCCAAGGTC GCCCTATCAT GCCCCGAGGT ACGACTATTA TCGAAGCCGA TGACGAAGTG
TTTTTCGTGG CCGACAGTCG CCATATCCGC GCGGTGATGA GTGAGATGCA AAAGCTGGAT
AACTCCTACC GCAATATCAT GATTGCTGGC GGTGGTAACA TCGGCTTAGG CCTCGCTAAA
CGCCTCGAAC GCACCCACTC GGTCAAGCTG ATTGAGCATA AGTTTGAACG CGCCGAAACA
CTCTCTGAAC AGCTTGAAAA CACGACAGTA TTTTGTGGTG ACGCCTCAGA TCAAGAGTTG
CTGCTCGAAG AACATATCGA CCAAACCGAC GTGTTTATTG CCGTCACCAA CGACGATGAA
GCCAACATCA TGTCCGCCCT GTTAGCTAAA CGTATGGGGG CGAAAAAGGT GATGGTGTTG
ATCCAACGCG AAGCCTATGT GGATATTGTG CAGGAAGCTA ATATCGATAT CGCGATTTCA
CCCCAGCAGG CGACGATTTC AGCCTTACTA ACCCACATCC GCCAAGGCGA TATCTGTAAC
GTGTATTCCT TACGCCGCGG CGCCGCCGAA GCGATTGAAG CCATTGCCCA TGGCGACTCC
AGCACCTCTA AGGTTGTTGG CAAGGCGATT GGTGATATCA AGCTGCCGCC GGGAACCACC
ATTGGCGCCA TAGTGCGTAA TGAAGAAGTG CTGATGGCCC ACGACAAGAC AGTGATAGAA
CAAGGGGATC ACGTGATCCT GTTCCTCGTG AACAAAAAGT TTGTCGGCGA AGTCGAGAAA
CTGTTCCAAC CTAGCGCCTT CTTCTTCTAA
 
Protein sequence
MKIIILGAGQ VGGTLAENLV GENNDITIVD SDKSRLRALQ DKYDLRVVAG HGAHPDVLKE 
AGAEDADMLI AVTNSDECNM VACQMAYSLF GTPTKIARIR SEPYLAMRDK LFIDSETKNS
EGRPRGGFVI DELIAPEQLV TAYIQRLVEY PGALQVLEFA EGRLSLVAVR AYYGGPLVGN
ALAALREHMP NIDTRVAAIF RQGRPIMPRG TTIIEADDEV FFVADSRHIR AVMSEMQKLD
NSYRNIMIAG GGNIGLGLAK RLERTHSVKL IEHKFERAET LSEQLENTTV FCGDASDQEL
LLEEHIDQTD VFIAVTNDDE ANIMSALLAK RMGAKKVMVL IQREAYVDIV QEANIDIAIS
PQQATISALL THIRQGDICN VYSLRRGAAE AIEAIAHGDS STSKVVGKAI GDIKLPPGTT
IGAIVRNEEV LMAHDKTVIE QGDHVILFLV NKKFVGEVEK LFQPSAFFF