| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0025 |
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| Symbol | |
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| ID | 4250711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 28949 |
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| End bp | 30391 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638116564 |
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| Product | TrkH family potassium uptake protein |
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| Protein accession | YP_732164 |
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| Protein GI | 113968371 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.053373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00232056 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGAACT TTAGACCGCT ATTGTTTATT TTGGGGCTGT TTCTGTCGAT GTTAACAGCC
TTTATGTTAG CGCCCCTGCT CCTTGCCGTA TTCAACGGTG AGGAAACCGT GGGCGCTTTC
ATGCTGTCGG CCTTAGTCAC TGGGATTTGC GCCAGCCTCT GTTTGCATAA CGGCCAGAGC
AAAACCATTA ACCTCAATAT TCGCGATATG TTTCTGCTCA CCAGCCTCAC TTGGCTGATC
GTGAGCCTAT TTGCCGCCAT GCCTTTTACC TTGTACCACG GCATTGGCTA TACAGACGCC
TTCTTCGAGA CCATGTCCGG CATTACCACC ACAGGTTCAA CCGTGCTCTC AGGCTTAGAT
ACTATGGACC ACAGTATCTT AATCTGGCGC TCGTTGTTGC AATGGCTCGG CGGTATCGGC
TTTATCGTGA TGGCGGTAGC GATTCTGCCC TTCTTAAACG TCGGTGGTAT GCGGCTGTTC
CGCACCGAGT CATCGGATTG GAGCGATAAG GCGGTACCGC GCACACAAAA CATGGCTAAG
CATTTATTTT TTATCTATAT TTTGCTGACT GTGATGTGCT GCGTTGCCTA CCATATTGCT
GGCATGACTT GGTTTCAAGC CATTAACCAT GCGATGACCA CACTGTCGAC GGGGGGCTAT
TCGACCTCAG ATAACTCGAT GGCGGCGTTT TCAAACTCAG CCCATTGGGT TGGCGTTGTG
TTTATGGCGG CGGGAGGCTT ACCCCTGCTG ATGTTTGTGC AGATGATCCA ACAGCGAGAC
TTTACCGTCT GGAACGATGC TCAAGTCAAA GGCTTCTTGT TTTTCCTCAC TTTTGTGTCT
TGTTTTATTG GCTTCTGGCT GTGGCAAACG CGGGATATCG CCCTTATCGA CGCGCTGCGC
CTCTCCAGCT TTAACGTGGT TTCCGTGGTC ACCACCACAG GTTATGGTTT AACCGACTAC
GGCGCTTGGG GCGCATTTGC GAATATCGCG TTTTTATTCT TAATGTTTGT CGGCAGCTGC
TCGGGCTCCA CCTCTGGCGG GATTAAAATC TTCCGCTTCC AAATTGCCGG CGCCATTATG
CGCGAGCAGT TAAAGCAGCA ATGCCATCCC AATGGCATCT TCCGGGAGCG CTATAACAAC
CGTCTGATCA GTGAAGATAT TGTGCGCTCA CTGATCACCT TTGTGCTGCT GTTTATGTTT
GTGATTGTTG GACTCTCGGT GATTCTGGTG CTGACTGGGC TAGACCCCAT GACCAGCTTT
ACCGGCGCTA TTACCGCAGT CACCAACGTA GGCCCTGGGC TTGGCCCCAT CATTGGTCCT
GCGGGTAACT TCTCGACGCT GCCCGATTTG GCTAAATGGG CACTTTCTTT GGGTATGTTG
CTCGGCCGCT TAGAGATTTT AACCGTGGCT GTACTGTTCC ATCCCAGTTT TTGGAAATAC
TAA
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| Protein sequence | MLNFRPLLFI LGLFLSMLTA FMLAPLLLAV FNGEETVGAF MLSALVTGIC ASLCLHNGQS
KTINLNIRDM FLLTSLTWLI VSLFAAMPFT LYHGIGYTDA FFETMSGITT TGSTVLSGLD
TMDHSILIWR SLLQWLGGIG FIVMAVAILP FLNVGGMRLF RTESSDWSDK AVPRTQNMAK
HLFFIYILLT VMCCVAYHIA GMTWFQAINH AMTTLSTGGY STSDNSMAAF SNSAHWVGVV
FMAAGGLPLL MFVQMIQQRD FTVWNDAQVK GFLFFLTFVS CFIGFWLWQT RDIALIDALR
LSSFNVVSVV TTTGYGLTDY GAWGAFANIA FLFLMFVGSC SGSTSGGIKI FRFQIAGAIM
REQLKQQCHP NGIFRERYNN RLISEDIVRS LITFVLLFMF VIVGLSVILV LTGLDPMTSF
TGAITAVTNV GPGLGPIIGP AGNFSTLPDL AKWALSLGML LGRLEILTVA VLFHPSFWKY
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