Gene Shewmr4_0017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0017 
SymbolfadA 
ID4250616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp19987 
End bp21150 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content52% 
IMG OID638116556 
Product3-ketoacyl-CoA thiolase 
Protein accessionYP_732156 
Protein GI113968363 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value9.28533e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAAG CTGTTATCGT AGATTGCATT CGTACTCCTA TGGGCCGTTC TAAGGCTGGG 
GTGTTCCGTA ATGTACGTGC AGAAACACTC TCTGCCGAAT TAATGAAAGG TCTATTACTG
CGTAACCCGC AATTAGATCC CAATACTATT GAAGACGTGA TTTGGGGCTG CGTGCAGCAA
ACCCTAGAGC AAGGCTTCAA CATTGCCCGT AACGCATCAT TGCTGGCAGG TATCCCGAAG
ACGGCTGGCG CCGTGACAGT CAACCGCCTA TGCGGTTCTT CAATGGAAGC CATCCATCAA
GCCGCTCGCG CAATCATGAC TGGCATGGGC GACACCTTTA TCATTGGTGG TGTTGAACAC
ATGGGCCACG TGCCAATGAA CCACGGTGTG GACTTCCACC CAGGTTTAGC CAATAACGTC
GCTAAAGCGT CAGGCATGAT GGGCTTAACC GCTGAGATGT TAGGTAAGCT GCACGGTATT
ACCCGTGAGC AGCAAGATGC CTTTGCAGTG CGTTCACACC AACGCGCTCA CGCAGCGACT
GTTGAAGGCC GCTTTGCCAA GGAAATCTAT GGCATCGAAG GCCATGATGC TAACGGCGCG
CTGATTAAAG TGCTGCACGA CGAAGTGATT CGTCCAGAAA CCTCAATGGA ATCATTAGCG
GCGCTGCGTC CAGTATTCGA CCCTGCAAAC GGTACAGTGA CTGCCGGTAC CTCTTCAGCA
TTATCTGACG GCGCTTCGGC GATGTTAGTC ATGGAAGAGT CTAAAGCGCG CGCTTTAGGT
CTACCAATCC GTGCCCGTAT CCGCTCAATG GCCGTTGCAG GTTGTGACGC GGCAATCATG
GGTTACGGTC CAGTACCTGC TACTCAAAAA GCACTGGCTC GCGCAGGCAT CACAGTCAAT
GATTTAGATG TTATCGAACT GAACGAAGCC TTTGCCGCGC AATCTTTACC CTGCGTGAAA
GATTTAGGCC TGTTGGATGT GGTCGATGAG AAGATTAACC TCAACGGTGG TGCTATCGCG
CTTGGCCATC CACTGGGTTG CTCTGGTGCG CGTATTTCAA CGACGCTGAT CAACCTGATG
GAACACAAAG ATGCGACCTT AGGTTTAGCG ACTATGTGTA TCGGTTTAGG CCAAGGTATT
GCGACCGTTT TCGAACGCGT TTAA
 
Protein sequence
MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKGLLL RNPQLDPNTI EDVIWGCVQQ 
TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIIGGVEH
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKLHGI TREQQDAFAV RSHQRAHAAT
VEGRFAKEIY GIEGHDANGA LIKVLHDEVI RPETSMESLA ALRPVFDPAN GTVTAGTSSA
LSDGASAMLV MEESKARALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALARAGITVN
DLDVIELNEA FAAQSLPCVK DLGLLDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM
EHKDATLGLA TMCIGLGQGI ATVFERV