Gene Shewmr4_0015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0015 
Symbol 
ID4250614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp18661 
End bp19464 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content45% 
IMG OID638116554 
Productintegrase catalytic subunit 
Protein accessionYP_732154 
Protein GI113968361 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.2055e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGAGGC AAGGTATTTA TCAGGCAGTT GCTCGAATGG AAAGTCGTAG AGCTGAGCTA 
TCGGTCATCA AAGACTGGGT CCAGTACTGG CGTAAATATA TGCCAAGGTT AGGGGCCCGT
AAGCTCTACA CGTTGATAAA ATCCAAGCTG GTTGAGCACG ATATTAAACT CGGGCGAGAT
GGGTTCTTTA CCTATTTGAG AAGTGAAGGT TTACTGGTTA AACCGAAGAA AAGCTACACA
AAAACCACGT TCAGCAAACA CTGGATGAAG AAGCATCCTA ATTTGCTGAA AGAGGAAGGA
CTGCATGATG CAGGGCATGT ACTGGTCAGT GATATCACCT ATCTTGAGTC AGACCAAGGT
GTGCACTACC TGTCACTGGT CACCGATGCC AGTTCTCGTA AGATAGTCGG TCATCACGTG
AGTAAAGACA TGAAAGCCGA GAGTGTGGTG AAAGCGTTAA AAATGGCCAT AAAAGATAAA
CGCTATATCG GCAACGCAGT GCATCACTCA GACAGAGGTT TACAATACTG CTCAGCAGTT
TATCAGAATG CGCTTCAGGC GAGCCAAATC CAGCCGTCAA TGACGGATGG TTATGATTGC
TACCAAAATG CATTGGCAGA AAGAGTGAAT GGCATACTGA AGCAGGAGTT TTTACTGCAC
CGATGTAGGA CATTTGCGGA GCTGAAGATA CTTGTTAGAG AATCGATAGC AATATACAAC
GATATGAGAC CGCATCTGAG TTTGAATATG GCAACCCCTA ATCAGGTGCA CAATAGAAAA
GGCCAGCTAC TGGAGCTGGC CTAA
 
Protein sequence
MSRQGIYQAV ARMESRRAEL SVIKDWVQYW RKYMPRLGAR KLYTLIKSKL VEHDIKLGRD 
GFFTYLRSEG LLVKPKKSYT KTTFSKHWMK KHPNLLKEEG LHDAGHVLVS DITYLESDQG
VHYLSLVTDA SSRKIVGHHV SKDMKAESVV KALKMAIKDK RYIGNAVHHS DRGLQYCSAV
YQNALQASQI QPSMTDGYDC YQNALAERVN GILKQEFLLH RCRTFAELKI LVRESIAIYN
DMRPHLSLNM ATPNQVHNRK GQLLELA