Gene Shewmr4_0011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0011 
Symbol 
ID4250610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp12996 
End bp16184 
Gene Length3189 bp 
Protein Length1062 aa 
Translation table11 
GC content48% 
IMG OID638116550 
Productamidohydrolase 
Protein accessionYP_732150 
Protein GI113968357 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1228] Imidazolonepropionase and related amidohydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.93716e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGAAAC CTAAGCTGAC ACCGCTTTAT ATCGCCCTGA TGCTTGGCCT TAGTTCCCAT 
GCCGTACAGG CAACAGACGC CCAAAAAACC AGTTGGGACG TCAATGCGCC AGCCAATGCT
CCACTAGAAA AAGTGACCAT AGATGTAACC GAAGGCACTT GGATGAACAT CAGTGTCAGC
CCTGATGGTA AACATTTAGT GTTTGATTTA TTGGGTGATA TTTATCAAAT CCCCGTCACA
GGTGGCGAAG CCAAACCATT AGCTCAAGGC ATAGCTTGGC AAATGCAGCC CGTGTATAGC
CCAGATGGTA AGCACATTGC CTTCACCTCT GATGCAGATG GTGGCGACAA TATTTGGATT
ATGGACGCCG ACGGCAGCAA TCCACGCACT GTCACGACGG AAACCTTTCG TTTACTCAAC
AGTCCTGCGT GGAGCCCTGA TTCGCAATAT TTAGTCGGTC GTAAGCATTT TACCGCCAGT
CGTAGTTTAG GCGCCGGCGA AGTCTGGCTC TATCATGTCG CCGGTGGCGA AGGCGTTAAA
CTCACCGAAC GTCCTAACGA TGAAAAGGAT TTAGGCGAGC CAGCCTATTC ACCCGATGGC
CGCTATATCT ATTTCAGTCA GGATGATACT CCGGGGAAAA CTTTCCATTA TTCCAAAGAC
TCAGTAAACG GCATCTATAA AATCAAGCGT TACGATACCC AAACGGGTGA TATTGAAATC
TTGATCGAAG GAACCGGTGG CGCCATTCGT CCAACACCGA GTCCTGACGG CACCAAACTG
GCGTATATCA AGCGAGATGA TTTCCAATCC TCTTTGTATT TACTCGATTT AAAATCCGGC
GAAACGACTA AACTGTACGG CGATTTAGAC CGCGATATGC AAGAGACCTG GGCAATCCAC
GGTGTCTATC CCACTATGGC TTGGACTCAA GATAACAAAG ATATTTTTTT CTGGGCTAAA
GGCAAAATCA ATCGTCTGAA TGTGGCCAAT AAAACGGTCA CCAACATTCC CTTCAGCGTC
AAAACCCAGT TAGATGTGCA GCCTTCAGTA CGCTTTAAAC AAGATATTGA TAAGGATGTG
TTCGACGTAA AAATGCTGCG AATGGCACAA GTTTCACCGG ATGGCAGTAA GGTCGCCTTT
GAAGCATTAG GTAAAATCTG GTTGAAGACG CTTCCCGACG GCAAGATGTC ACGCTTAACC
GAGTTAGGTA ACGACATTGA AGAACTCTAT CCCCAGTGGT CGCGTGATGG CAAAAATATT
GTCTTCACAA CTTGGAATGA CCAAGACCAG GGCACAGTAC AAGTGATCAG TGCAAAAGGC
GGCAAAGCGA AACAACTTTC AACAGAACCA GGCAAATACG TTGAGCCCAC CTTCTCACCC
AATGGTGAGC TGGTTGTGTA TCGCAAAACC CAAGGTGGAC ACCTCACGCC TCGCACTTGG
TCGCAGGAAC CTGGCCTGTA CAAGGTTGAT TTAAAAACCA AACAGAATAA GAAAATCACT
GCAGAGGGTT ATCAAGCACA ATTCGGCGCT TCGGCAGACC GCATTTTCTT TATGAACACT
GGTGAAAACG ACACGCCACA GCTTGCCTCA ATTAACCTAG ATGGGTTTGA TAAGCGCGTT
CACTACAGCA GTAAGCATGC AACCGAATTT AGAGTTTCAC CCGACGGCGA ACAACTGGCC
TTTGCCGAGC GTTTTAAAGT TTGGGTTACC CCCTTTGCTA AACATGGTGA AACGGTTGAA
ATCGGCCCTA ACGCCAGCAA TCTTCCCGTC ACCCAGTTAA GTGTGCGAGC TGGCGAAAGC
ATCAGCTGGA ATAGCAAGAG TAACCAACTC TATTGGACTC TTGGCCCAGA ACTGTACCAA
GCCAATGTTG ATTCCCAGTA TCTTAAAAAG GACGAGCAAG CGAAGCCAAG CATTATCAAC
TTAGGCTTTA CCGAAAAGGC AGATGTTCCA CGTGGAACAG TCGCCTTTGT CGGCGGCAAA
GTGATCACCA TGGAAAATGA TCAAGTGATC GATAAGGGCG TAGTGATCGT CAAAGACAAC
CATATTCTAA CCGTTGGCGA TGCAAACACG GCAATTCCAA AGGATGCACA AGTCATCGAT
ATAGGTGGCA AATCCATTAT GCCCGGTTTG TTCGATGCGC ATGCCCATGG TGCTCAGGCC
GACGATGAAA TCGTGCCACA ACAAAACTGG GCACTCTACT CTGGATTATC CTTAGGCGTG
ACAACTATTC ATGATCCGTC AAACGATACC ACTGAGATTT TTGCCGCCTC GGAACAGCAA
AAAGCAGGTC ACATTGTTGG TCCACGCATT TTCTCGACTG GAACAATTCT CTATGGCGCA
AATGCTCCCG GCTACACCTC GCATATCGAC TCACTCGATG ATGCGAAATT CCATTTAGAG
CGACTGAAAA AAGTTGGTGC CTTTAGCGTT AAGAGCTACA ACCAACCGCG TCGCAATCAA
AGACAACAGG TTATCGCTGC AGCTCGCGAA CTCGAAATGA TGGTCGTGCC AGAGGGTGGC
AGCTTGCTAC AGCATAACCT CACCATGGTT GCCGATGGCC ATACAACCGT AGAACACTCA
TTACCCGTGG CAAATATTTA TAACGATATT AAACAGTTCT GGAGCCAAAC TAAGGTCGGT
TACACTCCAA CCTTAGTCGT CGCCTACGGC GGCATCTCGG GTGAAAACTA TTGGTACGAT
AAGACCGATG TGTGGGCACA TCCACGTTTG TCTATGTATG TGCCAAGCGA CATTTTGCAG
GCTCGCTCAA TGCGTCGCCC CCATGCACCA GACAGTCACT ACAACCACTT CAATGTTGCT
AAAGTCGCGA ATGAGTTCAA TAAGTTAGGT GTGCATTCAA ATATTGGCGC CCACGGTCAG
CGTGAGGGTT TAGCCGCACA TTGGGAAATG TGGATGTTCG CCCAAGGCGG TATGAGCAAT
ATGGATGTGC TCAAAACAGC GACCATCAAC CCAGCCACCA CCTTCGGTCT AGAGCATCAA
CTTGGCTCAA TTAAAACAGG TAAACTTGCA GACTTAATCG TAATCGATGG CGACCCATTA
GCGGATATTC GACTCACAGA TAAAGTCACT TTTACCATGG TCAATGGTAA GTTGTTCGAC
GCTGAGTCGA TGAACCAACT CAATGGTAAC AAGCAACAGC GTAAGCCTTT CTTCTTCGAG
AAAATCTAA
 
Protein sequence
MLKPKLTPLY IALMLGLSSH AVQATDAQKT SWDVNAPANA PLEKVTIDVT EGTWMNISVS 
PDGKHLVFDL LGDIYQIPVT GGEAKPLAQG IAWQMQPVYS PDGKHIAFTS DADGGDNIWI
MDADGSNPRT VTTETFRLLN SPAWSPDSQY LVGRKHFTAS RSLGAGEVWL YHVAGGEGVK
LTERPNDEKD LGEPAYSPDG RYIYFSQDDT PGKTFHYSKD SVNGIYKIKR YDTQTGDIEI
LIEGTGGAIR PTPSPDGTKL AYIKRDDFQS SLYLLDLKSG ETTKLYGDLD RDMQETWAIH
GVYPTMAWTQ DNKDIFFWAK GKINRLNVAN KTVTNIPFSV KTQLDVQPSV RFKQDIDKDV
FDVKMLRMAQ VSPDGSKVAF EALGKIWLKT LPDGKMSRLT ELGNDIEELY PQWSRDGKNI
VFTTWNDQDQ GTVQVISAKG GKAKQLSTEP GKYVEPTFSP NGELVVYRKT QGGHLTPRTW
SQEPGLYKVD LKTKQNKKIT AEGYQAQFGA SADRIFFMNT GENDTPQLAS INLDGFDKRV
HYSSKHATEF RVSPDGEQLA FAERFKVWVT PFAKHGETVE IGPNASNLPV TQLSVRAGES
ISWNSKSNQL YWTLGPELYQ ANVDSQYLKK DEQAKPSIIN LGFTEKADVP RGTVAFVGGK
VITMENDQVI DKGVVIVKDN HILTVGDANT AIPKDAQVID IGGKSIMPGL FDAHAHGAQA
DDEIVPQQNW ALYSGLSLGV TTIHDPSNDT TEIFAASEQQ KAGHIVGPRI FSTGTILYGA
NAPGYTSHID SLDDAKFHLE RLKKVGAFSV KSYNQPRRNQ RQQVIAAARE LEMMVVPEGG
SLLQHNLTMV ADGHTTVEHS LPVANIYNDI KQFWSQTKVG YTPTLVVAYG GISGENYWYD
KTDVWAHPRL SMYVPSDILQ ARSMRRPHAP DSHYNHFNVA KVANEFNKLG VHSNIGAHGQ
REGLAAHWEM WMFAQGGMSN MDVLKTATIN PATTFGLEHQ LGSIKTGKLA DLIVIDGDPL
ADIRLTDKVT FTMVNGKLFD AESMNQLNGN KQQRKPFFFE KI