Gene Shewmr4_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0008 
SymbolglyS 
ID4250607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp9235 
End bp11301 
Gene Length2067 bp 
Protein Length688 aa 
Translation table11 
GC content49% 
IMG OID638116547 
Productglycyl-tRNA synthetase subunit beta 
Protein accessionYP_732147 
Protein GI113968354 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0751] Glycyl-tRNA synthetase, beta subunit 
TIGRFAM ID[TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.20926e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATTTTG AAAACTTACT CATCGAGTTA GGCACTGAAG AATTGCCGCC AAAGGCGCTG 
CGTAAACTGG CTGAGTCTTT CTTAGCGAAC TTTACCGAAG AATTAACTAA AGCCGATTTA
GCTTTTAAAT CAGCTGTTTG GTACGCTGCG CCCCGCCGTC TAGCCATTAA TGTGACTGAA
CTAGCGATTG CTCAAGCGGA CAAAATCGTT GAAAAACGCG GCCCAGCTGT CAGCTCAGCC
TTCGATGCCG AAGGTAAACC AACGAAAGCC GCTGAAGGTT GGGCACGTGG TAACGGTATT
ACCGTTGACC AAGCTGAGCG TTTAGTGACA GACAAAGGTG AATGGCTGGT TTATAACGCC
AAAGTCGAAG GCGTTGAAAC CAAGAGCTTA ATCGCTGCTA TGGCACAACG TGCTTTAGAT
AAGTTACCTA TTCCTAAGCC AATGCGCTGG GGAAGCAGCA AGACACAATT CATTCGCCCT
GTTCACACCG CCACTATGTT GTTAGGCAGT GAGTTAATCG AAGGTGAATT ACTCGGCATT
AAATCGGCAC GCAATGTTCG TGGCCACCGC TTTATGGGGA CAGGCTTCGA GCTTGACCAT
GCAGACAACT ACCTGACACT GCTGAAAGAA AAAGGTAAAG TCATCGCCGA TTACGAAAGC
CGTAAAGCCT TAATCAAAGC CGATGCGGAA AAAGCGGCCG CTAAGATTGG TGGCACCGCC
GATATCGAAG ACGACCTGCT GGAAGAAGTC ACCTCTTTAG TTGAATGGCC AGTCGTATTA
ACCGCAAGCT TTGAAGAGAA GTTCTTGAAC GTGCCTTCAG AGGCCTTGGT TTATACGATG
AAGGGCGATC AGAAATACTT CCCAGTATTC GATGAAGCCG GTAAGTTACT GCCAAACTTC
ATCTTTGTCG CGAACATCGA ATCAAAAGAT CCGGCGCAAA TCATTGCGGG TAACGAGAAA
GTGGTTCGTC CACGCTTGGC CGACGCCGAG TTCTTCTTCA ATACCGACAA AAAACACACG
CTGGAATCAC GTTTACCAAG TCTTGAGACC GTCTTGTTCC AACAACAACT CGGTACCTTA
AAAGACAAAG TCACTCGTAT CTCTGCCCTA GCCGCCTTTA TTGCCGAGCA AACTGGCGCT
AACGCCGTTG ATGCCGCCCG TGCTGGTTTA TTGTCTAAAA CAGACTTAAT GACCAATATG
GTGATGGAGT TTACCGATAC TCAAGGCACT ATGGGCATGC ATTACGCCCG TCTAGACGGT
GAAACTGAAG CCGTAGCCTT GGCGATGGAA GAGCAATACA AGCCAAAATT CTCTGGCGAT
ACGGTTCCGA CAGCAGCGGT ATCTTGCGCA GTAGCTTTAG CGGATAAACT CGACACCTTA
GTCGGTATCT TCGGTATTGG TCAGGCACCT AAGGGCGCTG CCGACCCATT CGCACTGCGC
CGCGCCGCTA TCGGTGTGCT ACGCATTATC GTTGAGAACA AGTTGCCACT GGACTTAGTG
ACCCTAATTG CTAAGGCTCA AGAACTCCAT GGCACTAACT TAAGCAACGC GAATGCAAGC
GATGAAGTGC TTGAGTTCTT AATGGCGCGT TTCCGTGCTT GGTACCAAGA TAAAGGTATC
GATGTTGACG TGATCCTCGC CGTATTAGCA CGTCGCCCAA CTCGCCCAGC TGATTTTGAT
AGCCGTATCA ATGCGGTATC ACACTTCAGA AGCTTAGAAG CCTCTAGTGC TCTGGCAGCG
GCGAATAAGC GTGTGTCTAA CATTCTGGCG AAAGTGGAAG GCGAATTACC TACAGCAATT
AATTCGGCTC TGTTAGCCGA AGCCGCAGAA CAAGCATTAG CCGCTAAGCT TGCCGAACTG
CAACCTCAAC TCGCTCCACT GTTTGCAAAT GCAGATTACC AACAGGCATT AACGCTGCTG
TCGAGCTTAC GTGAAAGTGT TGACCAGTTC TTCGAAGACG TGATGGTTAT GGCGGATGAC
GAAGCATTGA AAAACAACCG TTTAGCACTG CTTAATAACC TACGTGAGCA GTTCTTACAT
GTTGCGGATA TTTCTCTGCT TCAGTAA
 
Protein sequence
MNFENLLIEL GTEELPPKAL RKLAESFLAN FTEELTKADL AFKSAVWYAA PRRLAINVTE 
LAIAQADKIV EKRGPAVSSA FDAEGKPTKA AEGWARGNGI TVDQAERLVT DKGEWLVYNA
KVEGVETKSL IAAMAQRALD KLPIPKPMRW GSSKTQFIRP VHTATMLLGS ELIEGELLGI
KSARNVRGHR FMGTGFELDH ADNYLTLLKE KGKVIADYES RKALIKADAE KAAAKIGGTA
DIEDDLLEEV TSLVEWPVVL TASFEEKFLN VPSEALVYTM KGDQKYFPVF DEAGKLLPNF
IFVANIESKD PAQIIAGNEK VVRPRLADAE FFFNTDKKHT LESRLPSLET VLFQQQLGTL
KDKVTRISAL AAFIAEQTGA NAVDAARAGL LSKTDLMTNM VMEFTDTQGT MGMHYARLDG
ETEAVALAME EQYKPKFSGD TVPTAAVSCA VALADKLDTL VGIFGIGQAP KGAADPFALR
RAAIGVLRII VENKLPLDLV TLIAKAQELH GTNLSNANAS DEVLEFLMAR FRAWYQDKGI
DVDVILAVLA RRPTRPADFD SRINAVSHFR SLEASSALAA ANKRVSNILA KVEGELPTAI
NSALLAEAAE QALAAKLAEL QPQLAPLFAN ADYQQALTLL SSLRESVDQF FEDVMVMADD
EALKNNRLAL LNNLREQFLH VADISLLQ