Gene Shewmr4_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0007 
Symbol 
ID4250606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp8128 
End bp9171 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content46% 
IMG OID638116546 
Productputative signal transduction protein 
Protein accessionYP_732146 
Protein GI113968353 
COG category[T] Signal transduction mechanisms 
COG ID[COG1639] Predicted signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.36166e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGATTAAGT CCATATTTAA TAAAATCTTT AATATTCGTG AACAGACTAT TCTTGAGCGG 
CCTAAAAGCT TTAGTCAAAC CGATCTCAGC AAACCTGTAA CGGCTGTCTC TGGTAAGCAA
CAGCCGGAAG AGCCGCAGGA TACTTCTGTG AGTATTGACC TTGCGGCACT GTTTTACAGC
CTGTTATTTC CGGCCAGAAC TAAAGATGCT GGTGGCGTTG CCAATAACCT TGAACGGCGC
GTCATGGCTG AAATAGAGCT CGCCTTAGCA TCGCCACAAG TGATAGCCGA AAAAGTGCTG
AAGCTTCCCT CAAAGGTTTT GGAATTAGAC CGTAAATTAG CTGAGCCACA GTTTGATACT
AAGGACTTGT TGGCGTTAAT CGAGAAAGAT CCCTTACTGA GCGTCGAAGT GCTTAAACTG
TGTAACTCTC CGGCCTTTAA GCGTGGCGAT CGAGAGGTAA CAAGCTTGCA GCAGGCATTA
GTGCAACTTG GCCGTGAACA GTTACGCCGC TTTGTGACGA GCTGCCTAGT ACGAGAGATG
CTAGATATTA AACCCATTTA TTTTCGACGC TTTGGTGCCG AGATTTGGCG TCATTCGATG
CAGGTAGCCT TTTTAACCAG TGAACTGAGT GAAGAAGATA GAGACACCGC ATTCCTATTA
GGATTACTGC ATGATGTGGG TAAGCTCGCC ATCTTTAAAA TGCTACTCGA TGCCTTTGTA
CAAGCAGAAC CTGGAGAGCA GCCAAATTCT TGGTTATTCC GACAAGTGAT GACAGCCAAA
TCACTCACGT TAAGTGCTTT GTTGGCAAAG CATTGGCAAT TGCCAAGTAC CTTTGAAACC
GAGTTGGATA AATTAGCCCA TGTCCACACT CGACCAAATG AGGGGATTTC CGCAGTGGTT
TGGCGCGCCA ATATCATCAG TGAGATTTCG ATGCTGCAGC AAGCGAGTAA ATTACCTGCC
GACATGCTGG GCAACTTATT AGCCTTGGTT GGACTGGAGC CCGCTCAATT CGAAGCATTG
CACGAAAAAC TTCAGCAGTT TTAA
 
Protein sequence
MIKSIFNKIF NIREQTILER PKSFSQTDLS KPVTAVSGKQ QPEEPQDTSV SIDLAALFYS 
LLFPARTKDA GGVANNLERR VMAEIELALA SPQVIAEKVL KLPSKVLELD RKLAEPQFDT
KDLLALIEKD PLLSVEVLKL CNSPAFKRGD REVTSLQQAL VQLGREQLRR FVTSCLVREM
LDIKPIYFRR FGAEIWRHSM QVAFLTSELS EEDRDTAFLL GLLHDVGKLA IFKMLLDAFV
QAEPGEQPNS WLFRQVMTAK SLTLSALLAK HWQLPSTFET ELDKLAHVHT RPNEGISAVV
WRANIISEIS MLQQASKLPA DMLGNLLALV GLEPAQFEAL HEKLQQF