Gene Shewmr4_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0004 
Symbol 
ID4250603 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3843 
End bp6260 
Gene Length2418 bp 
Protein Length805 aa 
Translation table11 
GC content49% 
IMG OID638116543 
ProductDNA gyrase subunit B 
Protein accessionYP_732143 
Protein GI113968350 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.850847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.98396e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTCAGAGA ATAGTTACGA TTCTTCGAGT ATTAAGGTCC TAAAGGGCCT TGATGCAGTA 
CGTAAGAGAC CTGGGATGTA TATTGGTGAC ACCGACGACG GTACGGGTCT ACATCATATG
GTGTTCGAAG TAGTCGATAA CTCTATCGAT GAAGCCTTAG CCGGCCATTG TACTGATATC
ACTATTACTA TCCATGTGGA TGGTTCGGTC TCCGTTCGCG ACGACGGCCG TGGTATTCCT
GTGGCGATTC ACCCGGAAGA AGGCGTGTCT GCCGCCGAGG TGATCATGAC GGTACTGCAC
GCGGGCGGTA AGTTCGACGA TAACTCTTAT AAAGTGTCAG GTGGTCTGCA CGGCGTGGGT
GTATCGGTAG TTAACGCGCT GTCTAAAAAG CTGCAGTTAA CCATTCGCCG CGAAGGAAAA
GTCCACGAGC AGTTTTATAC CCACGGTGTA CCTGACGAGC CAATCAAAGT GATCGGCGAT
GCGACTAAAA CCGGTACCGA AATCCGTTTC TGGCCAAGTG AAGAAACCTT CAGCGATGTT
GAGTTCCACT TCGAGATTCT GGCAAAGCGC GTGCGCGAAC TGTCATTCCT CAACTCAGGC
GTGGGTATCC GCTTAGTCGA CGAGCGTGAC AATAAGAATG AATTCTTTAA ATACGAAGGC
GGTATCAGCG CATTCGTTGA TTACCTAAAC CGTAATAAAA CGCCAGTAAA CAAAGACGTA
TTCCACTTTA TGCAAGAGCG TGAAGATGGC ATTACCGTTG AAGTGGCGAT GCAGTGGAAC
GATGGTTACC AAGAAAGCAT TTTCTGTTTT ACCAACAACA TTCCACAGCG TGATGGTGGT
ACTCACCTAG CGGGTTTCCG TAGTGCGTTG ACACGTAACC TCAACAACTA CATGGAAAAC
GAAGGTTATA ACAAGAAAGG CAAAACTAAC GCGACAGGCG ATGACGCCCG CGAAGGTTTA
ACGGCCGTGA TTTCAGTTAA AGTGCCTGAT CCTAAGTTCA GCTCGCAAAC TAAAGACAAG
TTAGTCTCTA GCGAAGTGAA AGCCGCGGTT GAACAAACCA TGGGTGAAAA GCTAAACGAC
TATCTGCTGG AAAACCCTGC CGATGCTAAG TTAATCGTCG GTAAGATTGT CGATGCGGCC
CGTGCCCGTG AAGCGGCGCG TAAAGCCCGT GAAATGACCC GTCGTAAAGG CGCACTCGAT
TTAGGTGGTT TGCCAGGTAA GCTGGCGGAT TGCCAAGAGA AAGACCCTGG TCTTTCAGAA
ATCTACATAG TGGAAGGGGA CTCTGCTGGC GGTAGCGCTA AGCAGGGACG TAACCGTAAG
AACCAAGCGA TTCTGCCACT GAAAGGTAAA ATCTTAAACG TTGAGAAAGC GCGTTTCGAT
AAAATGCTTT CTTCTCAAGA GGTTGCAACG CTAATTACCG CACTTGGCTG TGGTATTGGT
CGCGACGAAT ACAACCCGGA TAAGACGCGT TACCACAACA TCATCATCAT GACGGATGCC
GACGTCGACG GCTCGCACAT TCGTACCTTG CTGTTGACCT TCTTCTTCCG CCAAATGCCT
GAACTGATTG AACGTGGTTA TGTGTATATT GCTCAGCCGC CTTTATTCAA AGTGAAGAAA
GGTAAGCAAG AACAATATCT CAAAGACGAA GCAGCACTGA CTCAGTATCT GACCACTCAA
GCGTTAGATG GTACTAGCAT TTACCCATCT CAAGGTGCGC CAGGTATGTC GGGTGAACCA
TTAGAGCGTT TAGTGACTCA GTATCGTGAA GTGGAAGCGA TTGTTGCTCG TTTAGAGCAA
CGTTACCCAA CGCAGATCAC CAACCGCATG CTTTATCATC CAATGATCAA CAACGAGATG
TTGGCGGATG AAGGCAAGAT GAAGGAATGG ATCGACGCCT TTATCCATGA GCTGGTGGAA
TTAGAAAACA GCGGTGTGTT GTATTCTGGT GAGCCTGTAC TCGATCCTGA GCGTAAAGTG
TATCTGCCGA AGATCACTAT CCGTAAACAC GGTATCGATA CACACTACCT GTTCAGCTAC
GATTTCTTCC AATCAACTGA TTACCAACGC ATTGGTAAGT TAGGTGCGGC GCTCGAAGGC
CTGATTGAAG TCGGTGGTTA TGTACAGCGT GGCGACCGTG TGAAGGAAGT GGGTAGCTTC
ATTGAAGCGT TAGATTGGAC CATCGGCGAA GCCAAACGTG GCCTCTATAT CCAACGCTAT
AAAGGATTGG GTGAGATGAA CCCTGAGCAA TTGTGGGAAA CCACGATGGA TCCTGAATCT
CGCCGCATGC TGCAAGTGAC GATTGATGAT GCCGTTGGTG CGGATCAGCT GTTTACTTGT
TTGATGGGCG ACCAAGTGGA ACCACGCCGT GACTTTATCG AAGCCAACGC GCTGAACGTG
GCTAACTTAG ACGTTTAA
 
Protein sequence
MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCTDI 
TITIHVDGSV SVRDDGRGIP VAIHPEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG
VSVVNALSKK LQLTIRREGK VHEQFYTHGV PDEPIKVIGD ATKTGTEIRF WPSEETFSDV
EFHFEILAKR VRELSFLNSG VGIRLVDERD NKNEFFKYEG GISAFVDYLN RNKTPVNKDV
FHFMQEREDG ITVEVAMQWN DGYQESIFCF TNNIPQRDGG THLAGFRSAL TRNLNNYMEN
EGYNKKGKTN ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKAAV EQTMGEKLND
YLLENPADAK LIVGKIVDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPGLSE
IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG
RDEYNPDKTR YHNIIIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYVYI AQPPLFKVKK
GKQEQYLKDE AALTQYLTTQ ALDGTSIYPS QGAPGMSGEP LERLVTQYRE VEAIVARLEQ
RYPTQITNRM LYHPMINNEM LADEGKMKEW IDAFIHELVE LENSGVLYSG EPVLDPERKV
YLPKITIRKH GIDTHYLFSY DFFQSTDYQR IGKLGAALEG LIEVGGYVQR GDRVKEVGSF
IEALDWTIGE AKRGLYIQRY KGLGEMNPEQ LWETTMDPES RRMLQVTIDD AVGADQLFTC
LMGDQVEPRR DFIEANALNV ANLDV