Gene Shewmr4_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0002 
Symbol 
ID4250601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1482 
End bp2582 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content46% 
IMG OID638116541 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_732141 
Protein GI113968348 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.77304e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.3362e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAATTTT CAATTGATAG GGACGCCCTA TTAAAGCCGC TTCAATTGGT TTGTGGTGCG 
GTAGAAAGAC GCCATAACTT GCCTATTTTG GCAAATCTCC TTGTAGAAGT TAGTGGTCAC
TCACTCAAAA TGACAGGTAC TGACCTCGAA GTTGAGTTAG TGGGCCAGGC GGTCATTCAT
GGTGATATCG AAGAAGGTCG TACTACAGTT CCAGCTAAGA AGCTGTTAGA CATAGTTAAA
TCCTTACCCG AGCAAAGCGA GCTTAAGGTC GAGCAACAAG ATAACAAATG GTTGTTACGC
TCTGGCCGTA GCCGTTTCTC GCTGGCAACC CTGCCCGCTG AAGAATACCC CAATGTGGAA
GCCTTTCAGG CGGAAATCGA ATTTACCCTT AAGCAAGGCG TGCTGAAGTC ACTGATTGAT
GCGACTCAGT TTTCGATGGC GAACCAAGAC GTTCGTTACT ATCTGAATGG TTTATTGCTC
GAAACCGAAG GGAATGTGCT GCGCGCCATT GCTACCGACG GTCATCGCTT AGCCTTAAGT
CACAGAACCA TAGATGCGCA ATTACCTGAA AAACAAGTGA TCGTGCCCCG TAAAGGCGTG
ATGGAAATGG CGCGTTTGTT GGAAGCCGAT GATTTAGATA TCGCTATTGC CATTGGTGAT
AATGCTATTC GTGCGACCAC CAGCACCACA GTCTTTACCA GCAAATTAGT CGATGGTCGT
TTCCCCGATT ATCGCCGTGT GTTACCTAAG GGCGGTGATA AAATCGTTAT CGCCAGCCGT
AACCACTTCA AGCAAGCCTT AACCCGTGCT TCTATTTTAT CGAATGAGAA GTTTCGCGGT
GTACGCATTC AGTTAGAAGC GGGATTACTG AAAATCACCG CCAATAACCC AGAGCAGGAA
GAAGCGGAAG AAATCATCGA TGTGGATTAC AACAATCAGC CACTCGAAAT TGGTTTCAAC
GTCAGTTACT TATTGGATGT GCTAAACAAC CTTAAGTCCG ATGATGTACG TATCACCTTA
ATCGATGGTA ACTCGAGTGC TTTATTGGAA AACCACCTGG AAGAAGATTC CATGTATGTG
GTTATGCCGA TGCGCTTATA G
 
Protein sequence
MKFSIDRDAL LKPLQLVCGA VERRHNLPIL ANLLVEVSGH SLKMTGTDLE VELVGQAVIH 
GDIEEGRTTV PAKKLLDIVK SLPEQSELKV EQQDNKWLLR SGRSRFSLAT LPAEEYPNVE
AFQAEIEFTL KQGVLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS
HRTIDAQLPE KQVIVPRKGV MEMARLLEAD DLDIAIAIGD NAIRATTSTT VFTSKLVDGR
FPDYRRVLPK GGDKIVIASR NHFKQALTRA SILSNEKFRG VRIQLEAGLL KITANNPEQE
EAEEIIDVDY NNQPLEIGFN VSYLLDVLNN LKSDDVRITL IDGNSSALLE NHLEEDSMYV
VMPMRL