| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_5077 |
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| Symbol | secD |
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| ID | 4246732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 7745576 |
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| End bp | 7746961 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638109877 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_724453 |
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| Protein GI | 113478392 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTAGAC AAAATTCTTA TATAGCTTTA ATCTTAGTTC TAGTTATCGC ATCAGTTACA
GTATTAAGTC AAATTCCAAT TCGTTTAGGA TTAGATCTCA GAGGTGGGTC ACAACTCACT
ATTCAACTAC AAACCTCTGA GGAAATTCCC ACCATTGACG AACGTGTAAT GGAAGGAGTC
CTAAAAATAG TTGAAAATAG GGTTAATGCT TTAGGTGTAT CAGAATCAGT AGTTCAATCT
TTAGGACAAG ACCAAATTTT AGTTCAATTA CCAGGAGTAA ATGACCCTGA ACAAGCAGAA
CGGGTTTTAG GAGGGACAGC TCAACTTGAC TTTCGAGAAC AGTTACAAAG TACCGAGCAG
CAGTTAGCAA TTGAATATCA AGTACAGAGA CAACTATTAG TAGAGCAAGA ATTACTTAAA
AATAGTGAAG ACCAAGAAGC TATAGAAAAA AATTTAGAAT CTATCGAAAA AACAAATCAA
GCGATCGCCC AACTATTCAA AGAAGCAATT ATTAAAGGCC AAGACCTCAG AGATGCTTTA
GCGGAACCAG AAGCTCCTGG GTCTAATAAC TGGAATGTAG CTTTACGTTT CACCTCTGAA
GGAGGACAAA AATTTGCTGA ATTGACCAAA AATTTAGCAG GAACTGGGCG TAGTATCGGT
ATTTTCCTAG ACGATAAACT ATTAAGCGCT CCTACGGTTA GTGTTGAATT TGCAGAGACA
GGAATTACTG GTGGTAGTGC AGTTATTCAA GGTACATTTA CCCCTCAACA AGCTAATGAT
CTAGCTGTAC AACTGCGGGG TGGCGCTCTA CCTGTTTCTG TAGAAATAGT TGAAAATCGA
ACTGTTGGGG CCACTTTGGG CAGAGATAGT ATTCAGCGTA GTGTCTACGC CGGAATAGGT
GGTTTAATTC TGGTATTAAT ATTTATGGTT CTTTACTATA GACTACCTGG CGTCATTGCT
GACGTAGCCC TAGTTATTTA TGCCCTATTT ACCATTGCTA GTTTTTCCAT CTTGGGGGTT
ACTTTAACAT TGCCAGGAAT TGCTGGTTTT ATCCTGAGTA TTGGTATGGC AGTAGACGCC
AACGTTTTAA TTTTTGAACG GACAAGGGAA GAGTTACGAG CTGGCAAAAC TTTATATCGT
TCTGTAGAGT CTGGCTTTTA TCGGGCTTTT TCTAGTATTC TAGATGGTAA TGTCACAACT
TTGATTGCTT GCGTAGCACT ATTCTGGTTA GGAACTGGTT TAGTCAAGGG TTTCGCCCTA
ACTTTGGGAA TTGGTGTAGC AATAAGTATG TTTACCGCCC TGACTTGTAG TCGAACTTTG
ATGTTTTGGA CAATTGGATT TTCTCAATTC CGTAAACCAG AATTATTCTG TCCAGAACTA
AAGTAA
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| Protein sequence | MRRQNSYIAL ILVLVIASVT VLSQIPIRLG LDLRGGSQLT IQLQTSEEIP TIDERVMEGV
LKIVENRVNA LGVSESVVQS LGQDQILVQL PGVNDPEQAE RVLGGTAQLD FREQLQSTEQ
QLAIEYQVQR QLLVEQELLK NSEDQEAIEK NLESIEKTNQ AIAQLFKEAI IKGQDLRDAL
AEPEAPGSNN WNVALRFTSE GGQKFAELTK NLAGTGRSIG IFLDDKLLSA PTVSVEFAET
GITGGSAVIQ GTFTPQQAND LAVQLRGGAL PVSVEIVENR TVGATLGRDS IQRSVYAGIG
GLILVLIFMV LYYRLPGVIA DVALVIYALF TIASFSILGV TLTLPGIAGF ILSIGMAVDA
NVLIFERTRE ELRAGKTLYR SVESGFYRAF SSILDGNVTT LIACVALFWL GTGLVKGFAL
TLGIGVAISM FTALTCSRTL MFWTIGFSQF RKPELFCPEL K
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