| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4945 |
|---|
| Symbol | |
|---|
| ID | 4246599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 7535046 |
|---|
| End bp | 7537298 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638109756 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_724332 |
|---|
| Protein GI | 113478271 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTC TCCCCAGTTT TTCGATATCG CAAACTCCAA ATTTTGAGAC TTTAATACAA
CAGGCAGAAC TTTACTATAC TCAAGGACAA TTTTCAGAGG CTATGGGTTG TTGTCGTCAG
GTTTTAACTT TACAACCAAA TTGGGCCCCT GCTTATGTGA CTCTGGCAAA TATTCTGCAA
GCCCAAGGTA AAGTCTCTGA AGCAATTAGT GTATATTATC GGGCCATAGA ATTTAATCCT
GATTTATCTC AAGCTTATAT TAATTTGGGA ACTATGTTTT ATCGCCAGGG AAAATTAGAA
GAAGCTATAG CTAATTACTA TAAGGCTATT CAACTACAAC CAGAGATGGC TGCTGCTTAT
TGGAATTTGG CTAAGGTTTG GGAGCATCTG GGAAAGTCAG ATCAGGCGAT CGCTTCCCAA
CAAAAAGCAT TAGAATTAAA TCCAAGTTTA GGTGGGGTAG AGTTTAATTT AAGTGAAGGA
TATAGGTTAG CTAAGGAGGG TAAATTAGAG GAAGCTATTG CTGTTTGGCA AATGGCTATT
AAACTCAAGC CAAATTTAGC AGAAGCTTAT GGTCAAATTG GAATGATTTT GAGAAATAAA
GGTAAGTTTT CTGAAGCTCT TCAAAATCTG AAAAAAGCTA TTGAAATTCA ACCTAACTAC
GCTACAGCTC ATCAACATTT ATGTGGCATT CTTAGAGATG GTAATAATTA TAAAGTTGCA
AGAGAAGCAG TGAATAAATA TTATCAAGAA TGTCAGGAAA TGGATCCAAT TATGACCGGG
ATATATATGA TTAGCACTTA TCAAGTATCT GGGTTAAATG AAATTGCTAA AGATAGATTT
TTTGAGTTGG AGACTAAGAT TATAGAAAAT ATAAATTTTG TGAAAAATTC AGTAGAAATA
AAGTCTTTAT ATTGCAATTT TTTATTCAGT ATTCCTTACT TAAGAGATGA TATTAAAGCA
AATTCTAATG TCTACAGGTT AGTATCCAAA GCTTATACTA AATTAGTTCT TAAACTTAAG
TATGATCATT ATCAACAATT ATCAACTTTT GAGTTTATTC AAGGTCAAAA ATTAAAAATT
GGGTTGATCT CAAGTCATTT TTGTAGGCAT TCTGTAGGTT GGTGTAGTCT TGATATAATT
CGAGAGTTAG GAAATCTGAA TACAGAAATA TATTTGTATT CAACGGAACA TTTAAAAATA
GATGACCAAA CTCATAAATT TAGTCAAGCT GCCATTAAAT TATATGTGCC GAAAAAATAT
CCTGAGGGAA TAGCAGATGC CAAAGAAATT ATTGAGGAAA TTCAGCAAGA CAAAGTAGAT
ATATTGATAG ACTTAGACTC TCTAAGTTTA CCAATTAATA CAGAGATATT TTATCATCAA
CCAGCACCTA TTTGTATTTC TTGGTTAGGG TTTGATGCTC CTTATATATC TTCAGATAAT
TATTTTCTCT GCGACTGGAA TACTCACCCT CAAGATAGAG ATAAATACTA TGTAGAAAAA
TTGGTGAGAA TGAAAGATTC ATTTGTGGCA GTTTCTGGTT TTGAAAGAAT AGAAACAAGT
AAAACTACTT TAAGAAAATC TCAGAGAATA GGTTTGGATC AAATAGTTTA TCTCTGTTTA
GCATCGGGGA GGAAGTTTAA CCGAGATTTA GTTAATGGGC AAGTTGCTAT TTTGAAGCAA
GTTCCTAATA GTATCTTAGT TCATAAAGCA TTGGGAGATA TAGAAGTATT TCAATCTGCT
TATCATGAAG CTTGTAAAGC TGAGGGAGTG AGCATTCATC GGGTTAAATT TATGCCAATA
TTTTCTACAG AAGAAGAACA TAGAAGTATT TACTCTTTAG CAGATATTTT GCTTGATTCT
TACCCTTATA ATGGTGGTAC TCATACTTTA GAAGCTTTGT GGTTTAACTT GCCAGTGGTT
ACTTATGCTG GAGAACAATT TTTATCTAGA ATGGGTTATT CTTTTTTAGA AAGTTTAGAT
ATTAAATTAG GTGTATCATG GTCATGGGAA GAATATATTA ATTGGGGTGT AAAATTAGGT
CAAGATTATA ATTTACGACA AGAATATATT GATAGTTTAG TTAAGTCTAA GAGCCCAGAA
AATTTAGCGC CTTTGTGGAA CCCAAAAAAA TTTGCTCAAG ATATGTATGG GGCGATAGAA
AAATTATTGA TTAATGGCGA AAATGGGAGA AATAAAACTT CTAGTTCTAA GGGAATAAAC
AAGAAAAATT CTGATTTTAA GCCACTTGCT TAA
|
|---|
| Protein sequence | MNTLPSFSIS QTPNFETLIQ QAELYYTQGQ FSEAMGCCRQ VLTLQPNWAP AYVTLANILQ
AQGKVSEAIS VYYRAIEFNP DLSQAYINLG TMFYRQGKLE EAIANYYKAI QLQPEMAAAY
WNLAKVWEHL GKSDQAIASQ QKALELNPSL GGVEFNLSEG YRLAKEGKLE EAIAVWQMAI
KLKPNLAEAY GQIGMILRNK GKFSEALQNL KKAIEIQPNY ATAHQHLCGI LRDGNNYKVA
REAVNKYYQE CQEMDPIMTG IYMISTYQVS GLNEIAKDRF FELETKIIEN INFVKNSVEI
KSLYCNFLFS IPYLRDDIKA NSNVYRLVSK AYTKLVLKLK YDHYQQLSTF EFIQGQKLKI
GLISSHFCRH SVGWCSLDII RELGNLNTEI YLYSTEHLKI DDQTHKFSQA AIKLYVPKKY
PEGIADAKEI IEEIQQDKVD ILIDLDSLSL PINTEIFYHQ PAPICISWLG FDAPYISSDN
YFLCDWNTHP QDRDKYYVEK LVRMKDSFVA VSGFERIETS KTTLRKSQRI GLDQIVYLCL
ASGRKFNRDL VNGQVAILKQ VPNSILVHKA LGDIEVFQSA YHEACKAEGV SIHRVKFMPI
FSTEEEHRSI YSLADILLDS YPYNGGTHTL EALWFNLPVV TYAGEQFLSR MGYSFLESLD
IKLGVSWSWE EYINWGVKLG QDYNLRQEYI DSLVKSKSPE NLAPLWNPKK FAQDMYGAIE
KLLINGENGR NKTSSSKGIN KKNSDFKPLA
|
|---|
| |