| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4790 |
|---|
| Symbol | |
|---|
| ID | 4246444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 7362415 |
|---|
| End bp | 7364067 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638109638 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_724214 |
|---|
| Protein GI | 113478153 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.187036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.356857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCTGCA CATTAGTATT TACTATTTTC TGGCCTATTT TAGCTTGGTT AATGGGTGAA
ATGGCAGGTT ATATCGGCAA GGGAGATGTC AGAGCAATTA TTCAACTTGC AGGGCTAGCA
GCTATCATTT TTATGATTAA GGGCGCTGTA CAATATGGTC AAGATACTCT GATGGCAAAA
GCAGCTTTAA CCATTGCTTT AGACTTGCGC AAACAATTGT ATTCTCACTT ACAAAAACTT
CATATCAGTT ACTTTGAAAA ATCAAAAACT GGGGATCTTT CCTATCGAAT TACAGAAGAT
ATAGATCGTA CTGGGGAAGT TATCAATAAA TTTTTTCACC AATTTGTTCC TTGCATTTTA
CAATTAATAG TTGTATTAGG CTATATGGTC TATCTTAACT GGCAATTAAC TCTAGCAACT
CTGATAATTG CACCTTTGAT GGCATTATTA ATAGGTTGGT TTGGAGAGTT ATTACTTTCT
TTTTCTCGCC AAAGTCAACA TCGTATTTCC AATTTATCTG CTCTCATAAC TGAAGTATTT
AATGGTATTA GAATAGTTCA AACTTTTGCA GCTGAAGAAT ATCAAATTGC TCAATTTTCT
GTGGAAGCTG AACAAAACAG ACAAGCAAAA TATATGGCAG AAAAAGTTAA AGCACTCCAG
TTTGTAGTAG TGGGTTTCTT GGAAGCAATG AGTGTGATTT TTTTATTTTT ATTGGGAGGA
TGGCAAATAT CTCAAGGAAA TTTAAGTGGA GAAGGCTTTA TTAGTTATGT AACAGGTGTT
GCTTTGTTAA TTGATCCGAT TTCTTTAACA ACAAGTAATT ATAGTGAATT TAAACAAGGT
GAAGCTTCAT GCGATAGAGT TTTTGAAATC TTAAGAATTC AACCTAAAAT TATACAAAAA
ACAGATGCAA TTCCTCTTCC TACTGTAGTG GGAAAAGTAG AATATAAAAA TGTTTGTTTT
TCTTATAATT CTGAAAAGCA AGTTTTAAAA AATCTGAATT TGTTGGTAAA ATCAGGGGAA
ATAATTGCTT TTGTAGGAGC CTCTGGAGCA GGTAAAACTA CACTTATAAA CTTGCTTCCT
AGGTTTTATG ACCCTCAGTC AGGGGAAATA TTAATTGATG AGATAAATAT TCAAGATGTT
ACTCTTATAA GTCTAAGAAG ACAAATTGGA ATTGTTCCCC AAGAGGTAAC TTTATTTTCT
GGAACTATCT TACAAAATAT TGCCTTTGGT CAACTAGATT ATAATATTTA TGCAGTAAAA
GAAGCAGCTA AAATTGCTAA TGCTCATCAG TTTATTACTA AGCTACCGGA AGGTTATCAA
ACTTGGGTAG GTGAAAGGGG AGTTAATTTA TCTGGAGGGC AAAGACAAAG AATAGCGATC
GCTCGTGCAG TATTAGAAAA TCCGAGGATA TTAATATTAG ATGAAGCTAC TTCTTCTCTA
GACTATGAAT CTGAATCTTT AGTTCAAGAA GCCTTAGAAA GATTGATGGA AGGGAGAACT
GTATTTATTG TTGCTCATAG GTTGACAACT GTACAACGTG CTAATCGAAT TTTGGTTATG
GAAAATGGTG AAATTGTAGA GTCAGGTACT CACATAGAAT TATTAGAAAA AGGTGAACTT
TACACTCGTT TATATCAGAA ACAATTTAGT TAA
|
|---|
| Protein sequence | MTCTLVFTIF WPILAWLMGE MAGYIGKGDV RAIIQLAGLA AIIFMIKGAV QYGQDTLMAK
AALTIALDLR KQLYSHLQKL HISYFEKSKT GDLSYRITED IDRTGEVINK FFHQFVPCIL
QLIVVLGYMV YLNWQLTLAT LIIAPLMALL IGWFGELLLS FSRQSQHRIS NLSALITEVF
NGIRIVQTFA AEEYQIAQFS VEAEQNRQAK YMAEKVKALQ FVVVGFLEAM SVIFLFLLGG
WQISQGNLSG EGFISYVTGV ALLIDPISLT TSNYSEFKQG EASCDRVFEI LRIQPKIIQK
TDAIPLPTVV GKVEYKNVCF SYNSEKQVLK NLNLLVKSGE IIAFVGASGA GKTTLINLLP
RFYDPQSGEI LIDEINIQDV TLISLRRQIG IVPQEVTLFS GTILQNIAFG QLDYNIYAVK
EAAKIANAHQ FITKLPEGYQ TWVGERGVNL SGGQRQRIAI ARAVLENPRI LILDEATSSL
DYESESLVQE ALERLMEGRT VFIVAHRLTT VQRANRILVM ENGEIVESGT HIELLEKGEL
YTRLYQKQFS
|
|---|
| |