| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2777 |
|---|
| Symbol | |
|---|
| ID | 4245311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 4307061 |
|---|
| End bp | 4311179 |
|---|
| Gene Length | 4119 bp |
|---|
| Protein Length | 1372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638107835 |
|---|
| Product | glycerophosphoryl diester phosphodiesterase |
|---|
| Protein accession | YP_722432 |
|---|
| Protein GI | 113476371 |
|---|
| COG category | [C] Energy production and conversion
[S] Function unknown |
|---|
| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase
[COG4222] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.878054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00575711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGAT TAAAAAGTTT TACCGTATTA TCAGCGGATA CATTTGCAGA AGGTCCCCCA
TCAGGAAAAT TTATTGAAAC AAATAATCGA GATGTACCAT TTGATAGTCA ACCAGTCCAA
GGGTTTAGTG GTGTTGAGTT TGCTCCCGGT AGCGAAGATG GCAGTACTTA TTGGTTTCTA
TCTGATAATG GTTTTGGCTC TCAAGGAAAT AGTGCTGATT ATTTGCTCAG ACTATATAAA
GTTAACCCGA ACTTTGCTGG AGCAGAAAAT GGCGATACTA AGGTTGAGGT TCAAGATTTT
ATTCAACTAG CAGATCCTAA TAATCTTATA CCCTTTGATA TTTTCAATGA AGATACAAGC
GATCGCTTCT TAACTGGAGC TGACTTTGAT ACAGAGTCTT TTGTTATAGA TAATAATGGA
GATATTTGGG TCGGAGACGA ATTTGGACCT TATATTTTAC ACTTCGATAG CACGGGAACT
TTGCTTGAGG CTCCCATTGC CACACCCAAC ATAGAAATTT CTTTTAACTC TCTGAGTGGG
GAAGCGCCTT TAGTCATTGG ACACCGGGGT GCAAGTGGTT CTCGTCCCGA ACATACTCTA
GAAGCTTATA GACTAGCGAT CGAAAAAGGT GCAGATTTTA TTGAACCAGA CCTGGTAATT
ACTGCCGATG GTGTGCTTAT TGCCCGACAC GAACCACTGT TAGACGATAC TACAAATGTT
GCTGAAGTAT TCGCTCCAGA ACGTCAAAGC ACTAAGTTTC TTGATGGAGT AGAAACTACT
GGCTATTTTG CTGAAGATTT CACCCTTGAA GAAATCAAAC AATTACGCGC TGTTCAACCT
CGAGATTTCC GTGATCAATC TTTTAACGGT CAATTTGAAA TTCCCACCTT CCAAGAAGTT
ATCGAGTTGG TACAAAAAAT GGAAGAATCT GGGTTTGAGG TCGGTATCTA TCCGGAAACT
AAACATCCTA CGTTCTTTGA CCAACAAGGT TTATCCTTAG AAGAACCTCT AATTCAAACC
CTACAAAATA CAAGTTTCAC TGACCCAGAT CGTATTTTCA TCCAGTCGTT TGAGTTTGCT
AACTTAATTG ACTTACAAAA ACAGTTGAAT GCTCAAAGTC TCGGTGATAT TCCTTTAGTT
CAACTGTATG GAAATACTAC TGAAGGAGCA GATCCAAACA GTACCTTTTC TTCCCCCTTC
GACATTAGGT TTAATGTTGC TCAAGATAAT GACTTAGCAG CTATCTATGG TCAAGAATTC
CTAAATGCAG TAGAAGTTTC TCTCTCAGAA AATACAGTTT ATGCAGACCT TGACAGTGAA
GAATTTCTGG AAGTTATTAG TGGTCTATAT GCAGAAGGTG TTGGAACTTG GAAGAATAAC
ATTCTGTTGC GTGAGTCCCT TGATACTCGA GTCGATGGTA ACGGAGATGG TGTAGCCGAA
ATAAGTACCC AGTTAACAGG AGAAATTACT TCCTTTATCG AAGATGCTCA CGATGCAGGT
TTACAGGTTC ATCCCTACAC TTTACGGGAT GAAGAGCGTT ACCTTACCCT CAAGCCTGAT
CTAGAAGCTT TTGGCACAGG AACACCTCAA ACTGCGGAGG AGGAATTTCA ACAACTAATA
GATATAGGTG TAGATGGTTT CTTTACTGAC TTCCCTGGGA CAGGTCGTAA AGTTCTAGAA
CAAAACGACT CTAATGATGA AGTTCGCTCT CCCCAAAACC CAGAAATTTC CTTTAACTCT
CTGAGTGGGG AAGCGCCTTT AGTCATTGGA CACCGGGGTG CAAGTGGTTC TCGTCCCGAA
CATACTCTAG AAGCTTATAG ACTAGCGATC GAAAAAGGTG CAGATTTTAT TGAACCAGAC
CTGGTAATTA CTGCCGATGG TGTGCTTATT GCCCGACACG AGCCACTGTT AGACGATACT
ACAAATGTTG CTGAAGTATT CGCTTCAGAA CGTCAAAGCA CTAAGTTTCT TGATGGAGTA
GAAACTACTG GCTATTTTGC TGAAGATTTC ACCCTTGAAG AAATCAAACA ATTACGCGCT
GTTCAACCTC GAGATTTCCG TGATCAATCT TTTAACGGTC AATTTGAAAT TCCCACCTTC
CAAGAAGTTA TCGAGTTGGT ACAAAAAATG GAAGAATCTG GGTTTGAGGT CGGTATCTAT
CCGGAAACTA AACATCCTAC GTTCTTTGAC CAACAAGGTT TATCCTTAGA AGAACCTCTA
ATTCAAACCC TACAAAATAC AAGTTTCACT GACCCAGATC GTATTTTCAT CCAGTCGTTT
GAGTTTGCTA ACTTAATTGA CTTACAAAAA CAGTTGAATG CTCAAAGTCT CGGTGATATT
CCTTTAGTTC AACTGTATGG AAATACTACA GAAGGAGCAG ATCCAAACAG TACCTTTTCT
TCCCCCTTCG ACATTAGGTT TAATGTTGCT CAAGATAACG ACTTAGCAGC TATCTATGGT
CAAGCATTCC TAAATGCAGT AGAAGTTTCT CTCTCAGAAA ATACAGTTTA TGCAGACCTT
GACAGTGAAG AATTTCTGAA AGTTATTAGT GGTATATATG CAGAAGGTGT TGGAACTTGG
AAGAATAACA TTCTGTTGCG TGAGTCCCTT GATACTCGAG TCGATGGTAA CGGAGATGGT
GTAGCTGAAA TAAGTACCCA GTTAACAGGA GAAATTACTT CCTTTATCGA AGATGCTCAC
GATGCAGGTT TACAGGTTCA TCCCTACACT TTACGGGATG AAGAGCGTTA CCTTACCCTC
AAGTCTGATC TAGAAGCTTT TGGCACAGGA ACACCTCAAA CTGCGGAGGA GGAATTTCAA
CAACTAATAG ATATAGGTGT AGATGGTTTC TTTACTGACT TCCCTGGGAC AGGTCGTAAA
GTTCTAGAAC AAAACGACCC TAATTTGGCT ACTTCCAGCG GTTATAAAGG TATGGCATTC
AGTCGCGATC GCCAAACTTT CTATCCTTTA TTAGGGGGTA CAGTTGAAGG CGATCCAGAT
AATGCTTTAC GAATTTACGA GTTCGACTCT GTTTCTAGCT CTTTTGAGGA GGAGCTAGTT
GGTTTCTATC CTACTGATGT TACTGGTCAT ACTATCGGTG ACTTTACTCC TATTAATGAA
AGTGAATTTT TAGTTATTGA ACTGGATGAT CGTCAAGGGA ATGAAGCTGA GTTCAAAAAA
ATATTTAAAA TTGACATTTA TGAAGTTGAT GATCAGGGTT TTGTTGAAAA AGAGGAAATT
GTAGACTTAT TAGATATTGA GGATCCTAAT GACCTTAATG GTGATGGAGA TACTAGCTTT
AACTTCCCTT TTTCCAGCAT TGAGAATATG TTAGTTATTG ATGAAAACAC TATTCTGGTT
GCCAACGACA ACAACTATCC TTTCTCCAAA AGCCGAGGAG ATGATATTGA TAATACCGAA
ATAATTCAGA TAGAGCTAGA ACAACCTCTC CTTGTTGATA AGGGTTTGCT AATTAAAGGT
ACTCCTAAAA CAGAGCGTCT CATTGGTGGT GTTGGAGACG ATACTATTAT CGGTTTGAAT
GGCGCGGATA CCTTAGCAGG TCGTATTGGT AATGATCAAA TAATTGGTAG TCGTGGCAAT
GACTTATTGT TGGGTCAGGA TGGTAATGAT GAACTTCAAG GTCGTCAAGG CAACGATCAC
CTCTTGGGTG GTGATGGTGA TGATCAGTTA AATGGTGGTC AAGGGCGTGA TCGCATCAAT
GGCGGTCCTG GTGATGATAC TTTGACTGGT GGTGCAAGTA TTGACCGCTT TATCTTCAAT
AGTAATGAAG AATTTGAGTC TGATAATTTT GGTATTGATA CTATCAATAA TTTCCAACTA
GACCTCAGGA CAAATGAAGA TGGAAACCAA GGCGACTTAA TTCTTCTTGA TAAGTCAAGC
TTTACTGAGC TTAATAGTAC TGCTGGAATT GGTTTTAGTG TTAATAATGA TTTTGAAACC
GTTAACACTG ATAATAGTGT AGATGACTCT GATGCTTTCA TTGTTTATAG TGAAAAGTCT
GGAGGTCTAT TCTACAATGT AGATGGTGAG TCTACTCAGT TTGCTATCCT TGATGGTGCT
CCCAATATTA CTGAGGATAA TTTCCAAATT AGAAATTAG
|
|---|
| Protein sequence | MARLKSFTVL SADTFAEGPP SGKFIETNNR DVPFDSQPVQ GFSGVEFAPG SEDGSTYWFL
SDNGFGSQGN SADYLLRLYK VNPNFAGAEN GDTKVEVQDF IQLADPNNLI PFDIFNEDTS
DRFLTGADFD TESFVIDNNG DIWVGDEFGP YILHFDSTGT LLEAPIATPN IEISFNSLSG
EAPLVIGHRG ASGSRPEHTL EAYRLAIEKG ADFIEPDLVI TADGVLIARH EPLLDDTTNV
AEVFAPERQS TKFLDGVETT GYFAEDFTLE EIKQLRAVQP RDFRDQSFNG QFEIPTFQEV
IELVQKMEES GFEVGIYPET KHPTFFDQQG LSLEEPLIQT LQNTSFTDPD RIFIQSFEFA
NLIDLQKQLN AQSLGDIPLV QLYGNTTEGA DPNSTFSSPF DIRFNVAQDN DLAAIYGQEF
LNAVEVSLSE NTVYADLDSE EFLEVISGLY AEGVGTWKNN ILLRESLDTR VDGNGDGVAE
ISTQLTGEIT SFIEDAHDAG LQVHPYTLRD EERYLTLKPD LEAFGTGTPQ TAEEEFQQLI
DIGVDGFFTD FPGTGRKVLE QNDSNDEVRS PQNPEISFNS LSGEAPLVIG HRGASGSRPE
HTLEAYRLAI EKGADFIEPD LVITADGVLI ARHEPLLDDT TNVAEVFASE RQSTKFLDGV
ETTGYFAEDF TLEEIKQLRA VQPRDFRDQS FNGQFEIPTF QEVIELVQKM EESGFEVGIY
PETKHPTFFD QQGLSLEEPL IQTLQNTSFT DPDRIFIQSF EFANLIDLQK QLNAQSLGDI
PLVQLYGNTT EGADPNSTFS SPFDIRFNVA QDNDLAAIYG QAFLNAVEVS LSENTVYADL
DSEEFLKVIS GIYAEGVGTW KNNILLRESL DTRVDGNGDG VAEISTQLTG EITSFIEDAH
DAGLQVHPYT LRDEERYLTL KSDLEAFGTG TPQTAEEEFQ QLIDIGVDGF FTDFPGTGRK
VLEQNDPNLA TSSGYKGMAF SRDRQTFYPL LGGTVEGDPD NALRIYEFDS VSSSFEEELV
GFYPTDVTGH TIGDFTPINE SEFLVIELDD RQGNEAEFKK IFKIDIYEVD DQGFVEKEEI
VDLLDIEDPN DLNGDGDTSF NFPFSSIENM LVIDENTILV ANDNNYPFSK SRGDDIDNTE
IIQIELEQPL LVDKGLLIKG TPKTERLIGG VGDDTIIGLN GADTLAGRIG NDQIIGSRGN
DLLLGQDGND ELQGRQGNDH LLGGDGDDQL NGGQGRDRIN GGPGDDTLTG GASIDRFIFN
SNEEFESDNF GIDTINNFQL DLRTNEDGNQ GDLILLDKSS FTELNSTAGI GFSVNNDFET
VNTDNSVDDS DAFIVYSEKS GGLFYNVDGE STQFAILDGA PNITEDNFQI RN
|
|---|
| |