Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_1956 |
Symbol | |
ID | 4244380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | - |
Start bp | 3031977 |
End bp | 3033209 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638107075 |
Product | RNA polymerase, sigma 28 subunit |
Protein accession | YP_721682 |
Protein GI | 113475621 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.672319 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00257504 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATCACTA CCTCAGAAAT TTATCCTTAC ACTGAAGACA CACTGCAATC TAATAACTTG CAGAATGAGT GTTCTGAACA TCTAGGTCAA ACTATCAATG AATTAACAAT AGAGGATAAA AAAGTAGATA GTTCTCAAAT AAACACTAAC TATAGTGGCA GAGATTCAGT CCGTTCATAC CTCCAAGAAA TTGGGCGAGT TGATTTGCTT CAAAGAGATC AAGAAGTTTC TACAGCTCAA AAAGTTCAAC GTTATGTACA TTTATTGGAG TTACGCAACA AAGCCGCTGA ACAAGAACAA GAAATTCAGC GTTATGTTGA GATGATCAAG ATTCGTGATC GTCTGGCAGC TCGTTTAGGA CATAAACCAT CATTTGAGCG GTGGCTAAAG GCAGGAAATT TATCTATGGC AGAACTGAAA GAGATCATTG CTGTAGGAAA ACTTCGCTGG GCAAAGTTAA CAGGTTTAAA TGTAAAGGAA CTTGAGCAAA TTCAAACCGA AGGCATTGAA GCGAGACATC AGATGATAAG TACTAACTTG CGCTTAGTAG TCTCAATAGC AAAAAAGTAT CAAAATCGTG GTGTAGAACT TTTAGATTTA ATCCAAGAAG GTACTTTGGG TTTAGAAAGA GCTGTTGAAA AATTTGATCC ACAACGGGGA TATAGATTTA GCACTTATGC TTACTGGTGG ATTCGTCAAG GAATTACAAG AGCAATTGCT ACTCAAAGTC GAACAATTCG TTTACCTATC CATGTTAGCG AAAAATTAAA TAAAATCAAA AAAGTACAAC AAAAAATTTT TCAAGAAAAA GGATATACGG CTAAAGTTGA AGAAATTGCC CGAGAATTAA AAATTACAGC TGCCCAAGTT CGAGAAGTGT TAGTAAAAAT TCCACACTCG GTTTCCTTAG AAACTAAGGT CGGTAGGGAT AGAGATACTG AATTAGGGGA ACTTCTGGAA ACTAAAGATG CTTCTCCAGA AGAAATGTTA ATACGAGAGT CTCTGGTACA AGCTTTAAAA GAGTTACTAT TAGATTTAAC TCAACGAGAA AGGTATGTAA TTACTATGCG TTATGGCTTA GAAGATGGTC GTGCCTGCTC CTTATCAGAA ATTGCGTCTG CATTGAAACT CTCTCGGGAA CGAGTACGTC AAATTGAAGT CAAGGCTCTA CATAAGTTGC GTCAACCAAA GTTTCGTAAT CAAATACAGG ATTATTTAGA ATCTTTGAAT TAA
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Protein sequence | MITTSEIYPY TEDTLQSNNL QNECSEHLGQ TINELTIEDK KVDSSQINTN YSGRDSVRSY LQEIGRVDLL QRDQEVSTAQ KVQRYVHLLE LRNKAAEQEQ EIQRYVEMIK IRDRLAARLG HKPSFERWLK AGNLSMAELK EIIAVGKLRW AKLTGLNVKE LEQIQTEGIE ARHQMISTNL RLVVSIAKKY QNRGVELLDL IQEGTLGLER AVEKFDPQRG YRFSTYAYWW IRQGITRAIA TQSRTIRLPI HVSEKLNKIK KVQQKIFQEK GYTAKVEEIA RELKITAAQV REVLVKIPHS VSLETKVGRD RDTELGELLE TKDASPEEML IRESLVQALK ELLLDLTQRE RYVITMRYGL EDGRACSLSE IASALKLSRE RVRQIEVKAL HKLRQPKFRN QIQDYLESLN
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