| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1849 |
|---|
| Symbol | |
|---|
| ID | 4242712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 2832018 |
|---|
| End bp | 2832968 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638106970 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_721578 |
|---|
| Protein GI | 113475517 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.97184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATG AAAGTCCAAT TATTTTAGAA GTGAATAGTG AGTATGAAAT AACTCAACGT
TTAGATATTT GGCTGTCTCA ACAAATGCTA GAGTTATCGC GATCGCATAT TCAAAAGTTA
ATATCCCAAG GCAATGTGAA AGTAAATGAC CAACTCTGCA CTTCTAAAAA AGCAATAGTA
CACCAAGGGG ATAAGATTAT TTTAGTTATT CCACCACCAA TACCTTTGGC AATAGAAGCT
AATGATATTC CTTTAGATAT TCTCTATGAA GATGATGCTT TATTAATTAT CAACAAACCA
GCAGGTTTAG TCGTACATCC TGCTCCCGGA CATTCAGAAG GTACTTTAGT GAATGCACTT
TTAGCTCATT GTGACTCTTT GGCAGGTATT GGGGGAGTTC AACGACCGGG CATTGTGCAT
CGGTTGGATA AAGATACCAC AGGCGCGATA ATGGTGGCAA AAACAGACCA CGCTTATCAA
CATTTGCAGG CTCAGTTACA GGCAAAAACG GCAAGGCGAG AATATTTAGG AGTTGTTTAT
GGTAGTCCCA AAACTGACAG TGGTATAATA AATTTACCTA TCGGTCGTCA TCGGGTAGAC
CGCAAAAAAA TGGCGGTGAC ACCAGTTGAG AGAGGTGGAA AAATTGCTGT TACTCACTGG
GAAGTTAAGG AACGTTTGGG AAATTTTTCC ATGATATTGT TTCGCTTGGA GACTGGACGG
ACTCATCAAA TTCGGGTTCA TAGTGCTCAA GTAGGATATC CTATCGTGGG TGATACTATT
TATGGTAAGG GTCGTTCGGT GGGGGTGAAT TTAACTGGTC AAGTTCTCCA TGCTTGGCGA
CTAGAGTTAC AACATCCGGT TTCTGGGGAG TTGGTAGAAG CGATCGCTCC TTTACCAGAA
GATTTTCTGA CTTTGGTGGA GGTTTTACGT AAACGTTTTG GGTTAAGTTA G
|
|---|
| Protein sequence | MSDESPIILE VNSEYEITQR LDIWLSQQML ELSRSHIQKL ISQGNVKVND QLCTSKKAIV
HQGDKIILVI PPPIPLAIEA NDIPLDILYE DDALLIINKP AGLVVHPAPG HSEGTLVNAL
LAHCDSLAGI GGVQRPGIVH RLDKDTTGAI MVAKTDHAYQ HLQAQLQAKT ARREYLGVVY
GSPKTDSGII NLPIGRHRVD RKKMAVTPVE RGGKIAVTHW EVKERLGNFS MILFRLETGR
THQIRVHSAQ VGYPIVGDTI YGKGRSVGVN LTGQVLHAWR LELQHPVSGE LVEAIAPLPE
DFLTLVEVLR KRFGLS
|
|---|
| |