Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_1234 |
Symbol | |
ID | 4242161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 1911568 |
End bp | 1913487 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638106446 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_721057 |
Protein GI | 113474996 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.373435 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAA CATTCTGGTA TTGTCTAATA CTTAGTCCAG CAGTTTTAGG AGCAACTCTT GTTGCATCCT CATACGCTCT GGCGACTGAA AACAAGCAAA CTAATACAGT TATTCAGCCT CAAGCTGCAA CAACTGAAAA TATATCAATA AATAATAATA TAGATATACA GGAACCTGAT CTATTAGCTC AAGTTACTGC AACCAATTCG ACTAATTCTG TTGGGAATAC ACCTGCAACT ACCATACGAC AAATTAACCG CTATGGTAGA GAAGGTCGTA ATCTTCGTCG ACCAGGTCTT CGTAATATTA CGAACAATAG GAAACCAATA AAAGGACAAG TTACTTCTGT ATCTCAACTT TCTGATGTTC AGCCTACAGA TTGGGCTTTT CAAGCATTAC AGTCTTTGGT TGAGCGTTAT GGATGTATCG TTGGATATCC AGATGGTACT TACAGAGGCA ACCGTGCCTT AACTCGTTTT GAATTTGCTG CTGGTGTTAA TGCTTGCCTA GATAGAGTTA TGGAACTTTT ACAAGCAGCT ATAGAAGATA CCGTAAGTAG AGAAGACCTG GCTATTCTGC AAAGGTTACA GGAGGAATTT TCTGCAGAAT TAGCGATTCT CCGGGGTCGT GTTGATGCTC TAGAAGCTCG TGCTGCTGAA TTAGAGGCTA ATCAATTTTC TACAACTACT AAACTTAGGG GTGAGGTAAT TTTTGCCCTT GTTGATAACT TTGAAGACCA AGGAAAATAT GGAGCATTTG GTGATACTAT CCAGGATGAG GATCAAACGG TATTCCAGTA TAGGGTACGT CTGAATTTCA ATACTAGCTT TTCTGGTGAA GACTTATTAT TTACCAGGTT ACAAGCGGGT AATGCTCAAG CATTTAATCA AAAAATAGCT GAGTCTGAGG GACAGCAAAC CTTTAATATT CTTGACCGTA CAGATGATAC GCTTCAACTA GATAAGCTTT TCTACAAGTT CCCTGTCAGA GATAATATTA GAGTAACTAT TGCTGCTAAT AAGGTAAGTT GGTACGACTT TGTTCCTACA CTTAATCCTT ATATGGAAGA TTTTGATGGA GGCAGCGGTT CTCTAAGTGC TTTTGGTCAA AGAAACCCAA TCTATAGGTT AGGGGGTGGT AAAGGACTTG GAGTTGAGTA TGATTTTGGT TGTAAAGACC AATATGCTTG TACCTATAGT CCATTTTCTG TATCTTTTGG ATACTTAGCG GCAGAAGGTG AAAATCCTAG TCAAGGAAAA GGTCTGTTTA ATGGAGACTA TGCTGCACTA GCGCAACTAA CCTTTACTCC CATCAGAAAT TTCCAAGTTG GACTTACCTA CAATAAAGGT TATTTTGGTC CAGGGAACTT TGGATTTGAT GATGGTGCAG CCACAGGTCT AGGTGATAAT GGTAGTTTAA ACAGTGGATT TGTAGGAACT GGTATTGCTA ACAGTGTTTA TGGTTTAAAT GCTGGACTTA ATGATCGTCG ACCAGGTTCT GTCAATATTA ATAAGTCAGT TTCGACTAAT GCTTATGGTG TAGAAATGTC TTGGCGAGCA GCTGATTGGG TAACTATTAA TGGTTTTGGT ACATATCTTG ATGGGAAACT AATTGGCAAA GGTGATTTTG AAATTTGGAC TTATGGAGCT ACTATTGCTT TCCCTGATTT ATTGAAGGAA GGTAGTCTGG CTGGTATTGT TGTAGGTCGG GAACCTTATT TGAATGACTT AGAACTTCCT AGTGGTTTAG ATTCAGGATT ACGACAAGAT ATGTCATGGC ATCTTGAAGC ATTCTACAAA TATCAACTTA CAGACTACAT TTCAATTACT CCTGGTGTGA CTGTAATTAC AAATGCTAAC CAAGATGATG ATAACGATGA GTTAATTATT GGTACTATCA GAACTACTTT TCAGTTCTAG
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Protein sequence | MSKTFWYCLI LSPAVLGATL VASSYALATE NKQTNTVIQP QAATTENISI NNNIDIQEPD LLAQVTATNS TNSVGNTPAT TIRQINRYGR EGRNLRRPGL RNITNNRKPI KGQVTSVSQL SDVQPTDWAF QALQSLVERY GCIVGYPDGT YRGNRALTRF EFAAGVNACL DRVMELLQAA IEDTVSREDL AILQRLQEEF SAELAILRGR VDALEARAAE LEANQFSTTT KLRGEVIFAL VDNFEDQGKY GAFGDTIQDE DQTVFQYRVR LNFNTSFSGE DLLFTRLQAG NAQAFNQKIA ESEGQQTFNI LDRTDDTLQL DKLFYKFPVR DNIRVTIAAN KVSWYDFVPT LNPYMEDFDG GSGSLSAFGQ RNPIYRLGGG KGLGVEYDFG CKDQYACTYS PFSVSFGYLA AEGENPSQGK GLFNGDYAAL AQLTFTPIRN FQVGLTYNKG YFGPGNFGFD DGAATGLGDN GSLNSGFVGT GIANSVYGLN AGLNDRRPGS VNINKSVSTN AYGVEMSWRA ADWVTINGFG TYLDGKLIGK GDFEIWTYGA TIAFPDLLKE GSLAGIVVGR EPYLNDLELP SGLDSGLRQD MSWHLEAFYK YQLTDYISIT PGVTVITNAN QDDDNDELII GTIRTTFQF
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