Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_0324 |
Symbol | rpsD |
ID | 4243139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 499291 |
End bp | 499899 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638105657 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_720272 |
Protein GI | 113474211 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000226614 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAGGT ATAGAGGTCC ACGTTTAAGA ATAGTGCGTC GTCTAGGTGA TCTACCGGGG CTAACTCGTA AAAGTGCCAG ACGTGCTTAT CCACCTGGTC AACATGGTCA AAATCGCAGA AAGCGTTCAG AATATGCGAT TCGACTGGAA GAGAAACAGA AACTACTATA TAATTATGGT GTTTGTGAAC GTCAACTCCT ACGCTACGTA AAAAAAGCTC GTCGTGCAGG AGGTTCCACA GGAAAAGTAT TACTAGAACT TCTGGAAATG CGTTTAGATA ATACTGTATT TCGTTTAGGA ATGGCTCCAA CTATTCCTTC TGCACGACAG TTAGTGAACC ATGGTCATGT CACAGTTAAT GGTAAGGTAG TAAGTATTGC TAGCTACCAG TGTAAACCTG GAGAGGTAAT TAGTGTTAAG GAAAAAGAAA AATCTAAGGA AATGGTCAAG ACTAATCTCC AATATCCAGG TTTAGCTAAT ATTCCTAGCC ATTTAGAATT TGATAAAAAC AAGCTGGTTG GTAAAGTTAA TGGTATTGTG GAACGGGAGT GGGTGGCGCT TCAAATTAAC GAACTGTTAA TTGTGGAATA TTATTCCAGA CAAGCTTAG
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Protein sequence | MSRYRGPRLR IVRRLGDLPG LTRKSARRAY PPGQHGQNRR KRSEYAIRLE EKQKLLYNYG VCERQLLRYV KKARRAGGST GKVLLELLEM RLDNTVFRLG MAPTIPSARQ LVNHGHVTVN GKVVSIASYQ CKPGEVISVK EKEKSKEMVK TNLQYPGLAN IPSHLEFDKN KLVGKVNGIV EREWVALQIN ELLIVEYYSR QA
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