| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1545 |
|---|
| Symbol | rpoH |
|---|
| ID | 4241066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 1742593 |
|---|
| End bp | 1743435 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638105125 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | YP_719750 |
|---|
| Protein GI | 113461681 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.197254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AAACACAAGC AATGATGTTA GTTCCGCAAG GCAGTATCGA AGGTTATATC
CACGCAGCCT ATGATTACCC AATGTTGACT GCAGAAGAAG AAAAGGAATT GGCGGAACGT
TTGTACTATC ACCAAGATTT AGATGCGGCA AAAACATTGA TTTTGTCCCA TTTACGTTTT
GTTATTCATG TCGCACGTGG ATATTCCGGT TATGGTTTAC CGCAAGCCGA TCTTATTCAA
GAGGGTAATA TCGGCTTGAT GAAAGCGGTG AAACGTTTTA ATCCTGAAGT TGGTGTTCGT
TTGGTTTCTT TTGCAGTACA TTGGATTAAG GCTGAAATCC ATGAATATGT ATTACGTAAT
TGGCGTATTG TTAAAGTCGC AACAACTAAA GCACAACGTA AATTATTCTT TAATCTACGT
AAAACTAAAC AACGCTTAGG TTGGTTCAGT GATAAAGAAG TTGATATGGT TGCAAATGAA
TTGGGCGTTT CCAAAGAAGA TGTCCTTGAG ATGGAAAGCC GAATGACAGG ATCTGACGTC
GGTTTTGATT TACCTGTTGA TGATGACGAA AGTTACGCAC CAGCACTCTA TTTAGAAGAT
AAAAGCTCAA ATTTTGCGGC TGAGCTAGAA AACGAAAATT TTGAGACACA AGCAGCAGAT
CAGGTTGCCA ACGCCTTAGC TGAACTGGAT GAACGTAGTC AAGATATTAT TAAATCACGC
TGGTTAGATG ATGAAAAAGC AACACTACAT GATCTTGCAG CAAAATATAA CATTTCTGCT
GAACGTGTAC GTCAGCTTGA AACAAATGCG TTGAAAAAAC TGAAAAGTGC GGTGAGTTTT
TAA
|
|---|
| Protein sequence | MNKETQAMML VPQGSIEGYI HAAYDYPMLT AEEEKELAER LYYHQDLDAA KTLILSHLRF
VIHVARGYSG YGLPQADLIQ EGNIGLMKAV KRFNPEVGVR LVSFAVHWIK AEIHEYVLRN
WRIVKVATTK AQRKLFFNLR KTKQRLGWFS DKEVDMVANE LGVSKEDVLE MESRMTGSDV
GFDLPVDDDE SYAPALYLED KSSNFAAELE NENFETQAAD QVANALAELD ERSQDIIKSR
WLDDEKATLH DLAAKYNISA ERVRQLETNA LKKLKSAVSF
|
|---|
| |