Gene HS_1235 details

Gene Information

• Locus tag: HS_1235
• Symbol: rpoD
• ID: 4240746
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 1414343
• End bp: 1416130
• Gene Length: 1788 bp
• Protein Length: 595 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638104808
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_719447
• Protein GI: 113461378
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAATGATC ATCTTCCTGA AGATCTTGTT GATGCTGATC AAATTGAAGA TGTGATTCAA 
ATGATCAATG ATATGGGTAT TCAAGTACTT GAAAGTGTGC CTGATGCTGA TGACTTGATG 
CTCAATGAAA ATATTACGGA TGAGGATGCT GTTGAGGAAG CGACTCAAGT ATTATCAAGT 
GTAGAGGCAG AGTTAGGAAG AACAACAGAT CCTGTGCGTA TGTATATGCG TGAAATGGGA 
AGTGTTGAAC TTCTTACGCG TGAAGGCGAA ATCGATATTG CAAAACGCAT CGAAGAAGGG 
ATTAATGAAG TACAAAGTGC CGTAGCCGCT TATCCTAAAG CACTCAATTA TCTTCTTGAA 
CAGTATACTT TAGTTGAAGA AGGCGGTATG CGGTTGGCTG ATCTCATTAC CGGTTTTGTT 
GATCCAAATG CGGTTGTTGA AGAAGAGATA ATTGAAACCG ACGACATACT TACAGAAGAT 
GATGAAGAAC ATGTAGAAAG CAATGTTGAT GTAAACGATG AAGAAGAGGA AGAAGATAGC 
GAAGATAATA GCAATGTAGA CTCTGATTCG GATAACACAA TTGCCCCAGA AGTTGCTCGT 
GAGAAATTTG AAGCACTAAG AATACAACAC CAAAAAACCT TAGCCGCAAT AGAAAAATAT 
GGTCGTTCCC GTAAACAAGC AAAAGATCAT ATTCAAGCAT TAGCCGATAT TTTTACTCAG 
TTCCGTTTAG TGCCTAAACA GTTTGATGCG TTGGTCAATT ATATGCGTGA TATGATGAAA 
TCTGTTCGTC AGCATGAACG ACAAATTCAA AAGCTGGTAG TTGATTTGGC TAAAATGCCA 
AAAGAAAATT TCCAAAAATT ATTTATTGGC AATGAAAGTT CAGAGGGTTG GCTGGATAAA 
TTACTGCTTG CAAGAAAACC TTGGTCTGAA AGACTAATAC AACATGAAAG TGCGGTTCGT 
CAAAGCATAA ACCAATTATT AAAAATTGAA CAGGAAACCA ATTTAACTAT TTCTCAAATT 
CGTGAAATTT GTGACAAAGT GGCACAAGGA GAATTAAAAG CTCGCCGTGC AAAAAAAGAA 
ATGGTTGAAG CAAATTTACG TTTGGTTATT TCAATTGCGA AGAAATACAC TAACCGTGGA 
TTGCAATTCC TTGATCTCAT TCAAGAAGGG AATATTGGTT TAATGAAAGC GGTAGATAAA 
TTTGAATACC GGCGGGGTTA TAAATTTTCA ACCTATGCAA CTTGGTGGAT ACGTCAAGCG 
ATTACACGCT CTATTGCAGA TCAAGCAAGA ACGATCCGCA TTCCAGTTCA TATGATTGAA 
ACTATCAATA AATTAAACCG CATTTCTCGT CAAATGTTAC AAAAAATGGG GCGTGAAGCC 
ACATCTGAAG AATTAGCTGA ACGAATGGGA ATGCCTGAGG ATAAAATTCG TAAAGTATTA 
AAAATCGCAA AAGAGCCTAT CTCTATGGAA ACGCCTATCG GTGATGACGA TGATTCCCAT 
TTAGGTGATT TTATTGAAGA CAATACGTTA GAGCTACCGT TAGACTCTGC GACAGCCCAA 
AGTTTGCGTG CTGCAACGCA TGAAGTGTTG GAAGGACTAA CCCCAAGAGA AGCAAAAGTC 
TTGCGTATGC GTTTTGGTAT TGATATGAAT ACAGATCATA CCTTGGAAGA AGTCGGGAAA 
CAATTTGATG TAACTCGTGA ACGTATTCGT CAAATTGAAG CTAAAGCATT GCGTAAATTG 
CGTCATCCAA GTCGTTCTGA AACCCTACGC AGTTTCTTAG ATGAGTAA 

 

Protein sequence

MNDHLPEDLV DADQIEDVIQ MINDMGIQVL ESVPDADDLM LNENITDEDA VEEATQVLSS 
VEAELGRTTD PVRMYMREMG SVELLTREGE IDIAKRIEEG INEVQSAVAA YPKALNYLLE 
QYTLVEEGGM RLADLITGFV DPNAVVEEEI IETDDILTED DEEHVESNVD VNDEEEEEDS 
EDNSNVDSDS DNTIAPEVAR EKFEALRIQH QKTLAAIEKY GRSRKQAKDH IQALADIFTQ 
FRLVPKQFDA LVNYMRDMMK SVRQHERQIQ KLVVDLAKMP KENFQKLFIG NESSEGWLDK 
LLLARKPWSE RLIQHESAVR QSINQLLKIE QETNLTISQI REICDKVAQG ELKARRAKKE 
MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS TYATWWIRQA 
ITRSIADQAR TIRIPVHMIE TINKLNRISR QMLQKMGREA TSEELAERMG MPEDKIRKVL 
KIAKEPISME TPIGDDDDSH LGDFIEDNTL ELPLDSATAQ SLRAATHEVL EGLTPREAKV 
LRMRFGIDMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL RHPSRSETLR SFLDE