Gene HS_1149 details

Gene Information

• Locus tag: HS_1149
• Symbol: cydD
• ID: 4240650
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 1287535
• End bp: 1289298
• Gene Length: 1764 bp
• Protein Length: 587 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 638104712
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_719361
• Protein GI: 113461292
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAAAT CACGTCAAAA GTATGTTTTC AAATGGCTAC GCAAACAACA AAAGCCAATC 
AAAAAGTTGC TTTCGCTTAA TATTATTCTT GCAACTATTT CATCCATTAT TTTAGTTGCA 
CAAACTTATA TTTTAAGCTA CCTGCTTCAT CAACTCATTA TTTTAAATAC GGATCGAAGT 
GAATTAATAC CGCACTTTCT AGCACTTATT CTTGGTTTTA TGCTACGTGG TTTAATATTA 
TGGGCAAGGG AAAAAGTGGG CTTTAAATGC GGTCAACAAT TACGTCATCA TATTCGTCAA 
CAAATTTTCG CCAAAATTCA TCAAGCCGGT CCAGCAATGA TCAACCAAAA ATCTGCGGGA 
AGTTGGGCAA CCTTGATGCT GGAACAAGTA GAAAATCTGC ACAATTTTTA TGCTCGCTTT 
CTACCTCAAC AAGCACTTTC TGCCATTACG CCAATCATTA TCTTAATCGC TGTCTTTCCA 
CTCAATTGGG CGGCTGGATT AATCTTAGCA CTCACTGCTC CACTCATCCC TCTCTTTATG 
ATTTTAGCAG GATTGGCGGC TGCAGATAGC AGTCAAAAAA ATATGTCCGC CTTAGCAAAA 
CTTAGCGGTC AATTTTTAGA TCGTTTACGT GGATTAGAAA CATTACGCCT TTTCAATAAA 
GCAAAAGAGC AAACTGAATA TATTGAAGAA AGCACTGAAG ATTTTCGTGA AACAACTATG 
ACTGTGCTAA AAATGGCATT TTTATCTTCC GCAGTATTAG AATTTTTTAC TTCTATCTCT 
ATTGCATTAA TGGCAGTTTA TTTTGGTTTT AGTTATTTAG GACAAATTAA CTTCGGTTCT 
TACGACACTG AACTTACTTT ATTTATTGGC TTTTTCTGCT TAATTCTTGC TCCTGAGTTT 
TACCAACCTT TACGAGATCT AGGTGCTTAT TACCATGATC GTGCAGCAGG TATTGGTGCA 
GCCGATGAAA TCGTTAAATT TTTGGAGCAA GAAGTTACTT CTCAACAATA TGAACAAACA 
CATAGTATCG AGCCTAAAAG AGCGGTCGAA ATTATAGCGA AAAATCTCAT CGCACTTTCA 
CCACAAGGCC ATCCTTTAAC CGCTCCGTTA AATTTTTGCT TGACTGCTCA AAGCAATACT 
GCGTTAGTTG GGCAAAGCGG TGCAGGTAAA ACAACATTAA TCAACGTGTT ACTCGGTTTC 
TTAAATTATC AGGGAAGTTT AAAAATTAAT GGTATTGAAT TGCATGATTT ATCTTTAAAC 
GAATGGCGAA AAAATATCGC TTGGGTAGGG CAAAATCCTT TATTATTACA AGGCACGATT 
CGAGAAAATT TACTTTTTGG TGATATTCAA GCAACAGACG AACAAATTAC GCAAGCATTA 
GAACAAGCAC AAGCCACGTC TTTTTGTGCG AAATTAGGAC TTGATTTTCT GATTAGAGAG 
GGCGGTATTG GTTTATCCGT CGGACAAGCA CAACGTCTTG TTATTGCTCG CTCATTATTG 
CGTCAAAGCA ATTTATTATT ACTTGATGAA CCTACTGCAA GTCTTGATGC AAAATCGGAA 
AATGCCGTGC TACAAGTGTT ACAAAAAATT AGCCGTAACC AAACTACTTT AATGATTACG 
CATCGCATTG AAGATCTAAA ACAATGCGAC CAAATTTTAG TGATGCAACA AGGGCAAATT 
GTGCAACAAG GCCGTTTTGA ACAATTAAAA GAACAAGGTT TCTTCGCCGA ACTTTTGGCT 
CAACAAAAAC AGGAAATTCA ATAA 

 

Protein sequence

MEKSRQKYVF KWLRKQQKPI KKLLSLNIIL ATISSIILVA QTYILSYLLH QLIILNTDRS 
ELIPHFLALI LGFMLRGLIL WAREKVGFKC GQQLRHHIRQ QIFAKIHQAG PAMINQKSAG 
SWATLMLEQV ENLHNFYARF LPQQALSAIT PIIILIAVFP LNWAAGLILA LTAPLIPLFM 
ILAGLAAADS SQKNMSALAK LSGQFLDRLR GLETLRLFNK AKEQTEYIEE STEDFRETTM 
TVLKMAFLSS AVLEFFTSIS IALMAVYFGF SYLGQINFGS YDTELTLFIG FFCLILAPEF 
YQPLRDLGAY YHDRAAGIGA ADEIVKFLEQ EVTSQQYEQT HSIEPKRAVE IIAKNLIALS 
PQGHPLTAPL NFCLTAQSNT ALVGQSGAGK TTLINVLLGF LNYQGSLKIN GIELHDLSLN 
EWRKNIAWVG QNPLLLQGTI RENLLFGDIQ ATDEQITQAL EQAQATSFCA KLGLDFLIRE 
GGIGLSVGQA QRLVIARSLL RQSNLLLLDE PTASLDAKSE NAVLQVLQKI SRNQTTLMIT 
HRIEDLKQCD QILVMQQGQI VQQGRFEQLK EQGFFAELLA QQKQEIQ