| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1142 |
|---|
| Symbol | gatC |
|---|
| ID | 4240643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | - |
|---|
| Start bp | 1281019 |
|---|
| End bp | 1282377 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638104705 |
|---|
| Product | PTS system, galactitol-specific IIC component |
|---|
| Protein accession | YP_719354 |
|---|
| Protein GI | 113461285 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3775] Phosphotransferase system, galactitol-specific IIC component |
|---|
| TIGRFAM ID | [TIGR00827] PTS system, galactitol-specific IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACAG AAATTATGCA ATATATTTTG GATTTAGGCC CAGCGGTAAT GTTACCACTG
GTAATTCTCA TTCTCTCGCT AGCCTTAGGT ATGAAATTCG GAGAGTCTTT CAAAGCTGGT
TTATCTATCG GTATCGGCTT TGTAGGGATC GGGCTCGTAA TCGGTTTAAT GTTGGACTCT
ATTGGTCCTG CAGCAAAGGC AATGGCACAT ACCTTTGATA TTCAGCTAAA TGTTATCGAT
CTTGGTTGGC CTGGAGCTTC ACCGATGACT TGGGCTTCAC AAACAGCGTT AATAGCTATT
CCTATTGCGA TTGCGGTAAA TATAGCGATG TTGCTGTTAA AAATGACCCG TGTCGTAAAC
GTTGATATTT GGAATATCTG GCATATGACG TTTACTGGTG CGTTAGTTCA TATTGCGACA
GGTTCGTACT GGTTGGGTAT TCTTGGTGTT ATTGTTCATG CTGCTTTCGT TTATAAACTT
GGGGATTGGT TTTCTAAAGA CACCAAACAT TTCTTTGAAT TGGATGGTAT TGCTATTCCG
CATGGAACCT CAGCTTACTT AGGACCGGTA GCTGTATTGG TGGATACCAT TATCGAAAAG
ATACCAGGGT TAAATAAAAT CCATTTTTCA GCCGATGATC TACAAAAACG CTTTGGTGCT
TTAGGCGAAC CTGTAACCGT AGGTTTTATT ATGGGAGTAG TAATTGGGTT ACTTGCTGGC
TATTCTATGA AAGACGTGTT GCAATTAGCA GTCAAAACTG CAACAATAAT GCTGTTAATG
CCTCGTGTAA TCAAACCAAT CATGGACGGT TTAGCACCTA TTGCCAAACA GGCCCGTAAA
AAATTACAAG CACGTTTCGG CGGTAGCGAT TTCTTAATCG GCTTAGATCC TGCATTATTA
CTTGGTCACA CCTCCGTAGT ATCTGCAAGT TTAATCTTTA TTCCGCTTAC TATCCTAATT
GCTGTGTTCT TACCGGGTAA CCAAGTACTT CCATTTGGTG ATTTGGCAAC TATCGGTTTC
TTCGTTGCAA TGGCAGTAGC AGTACACCAA GGTAACTTAT TCCGAACCTT AATTTCCGGT
CTGATTATTA TGTCGATGAC CCTTTGGATC GCAACCCAAA CCATTGCGTA TCATACTCAG
CTGGCAGCTA ATGCAGGAAC ATTAAAAGCA GGAGAACAAG TCGCTTCAAT GGATCAGGGC
GGTTCACCGA TCACTTATTT GATGATTCAG GTGCTGACCT TTGAAAATAT TGTCGGAATG
ACTATTATTG CAATCATTTA CTTTTGCGGT GTATTCCTTA CTTGGCGAAG AGCCAAATCC
TATGAAAAAG AAATAGTCGC TCAATCAGCA CAAAATTAA
|
|---|
| Protein sequence | MFTEIMQYIL DLGPAVMLPL VILILSLALG MKFGESFKAG LSIGIGFVGI GLVIGLMLDS
IGPAAKAMAH TFDIQLNVID LGWPGASPMT WASQTALIAI PIAIAVNIAM LLLKMTRVVN
VDIWNIWHMT FTGALVHIAT GSYWLGILGV IVHAAFVYKL GDWFSKDTKH FFELDGIAIP
HGTSAYLGPV AVLVDTIIEK IPGLNKIHFS ADDLQKRFGA LGEPVTVGFI MGVVIGLLAG
YSMKDVLQLA VKTATIMLLM PRVIKPIMDG LAPIAKQARK KLQARFGGSD FLIGLDPALL
LGHTSVVSAS LIFIPLTILI AVFLPGNQVL PFGDLATIGF FVAMAVAVHQ GNLFRTLISG
LIIMSMTLWI ATQTIAYHTQ LAANAGTLKA GEQVASMDQG GSPITYLMIQ VLTFENIVGM
TIIAIIYFCG VFLTWRRAKS YEKEIVAQSA QN
|
|---|
| |