Gene HS_1062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHS_1062 
SymbolrnfD 
ID4240560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaemophilus somnus 129PT 
KingdomBacteria 
Replicon accessionNC_008309 
Strand
Start bp1176538 
End bp1177629 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content39% 
IMG OID638104623 
Productelectron transport complex protein RnfD 
Protein accessionYP_719274 
Protein GI113461205 
COG category[C] Energy production and conversion 
COG ID[COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 
TIGRFAM ID[TIGR01946] electron transport complex, RnfABCDGE type, D subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAAAA TGATTAGCTC CCCACATACT CATTCGGGGA AATTGACAGC CCGCATAATG 
TTATGGGTGA TTGTGGCAAT GTTACCGGCA ATCGCAGGGC AAGTATATTA CTTTGGATTT
GGCGTTTTGA TCCAATCACT GTTGGCAATA AGTACGGCGT TATCCCTCGA GTTTGTTGTA
ACCTTATTGC GTAAAAAACC AAAATTTTTT TATATTGGTG ATTTTAGCGT TGTTTTGACC
GCACTTATTC TCGCTGTTGC CATTCCGCCT TATGCCCCCT ATTGGGTTAT TATTATCGGT
ACATGTTGTG CTGTAATTTT AGGTAAACAT GTTTACGGCG GATTAGGACA AAATTTATTT
AATCCAGCAA TGGTGGGCTA TGTCATTTTG CTTATTTCAT TTCCCCTACA AATGACAACT
TGGTTACCTC CAATTCAACT GCTTAACGAA CCACCTCATT TTGCCGATGC GTATAAACTC
ATTTTCCAAG GTGTTACCAC TGACGGTTTT AATTTAAGCC AATTAATATT GGCTATTGAC
GGTATTAGCC AAGCAACGCC ATTAGACACA GTTAAAACAG CGATGCGGAA CAATTTATCT
TCATTACACG AAGTCAGCTC ATCACCTATT TTCAGTTCGG TTCTACCATT GGGAAAAAGG
GATATTGTTG AAGGAATGGG CTGGACACAA ATAAATTTAC TCTTTTTTCT AGGGGGTATC
TTCCTAATTT GGAAAAAAAT TATTCATTGG CAAATTCCAA CCGCACTTTT AGCAACAATT
TTTAGTTTTG CATTGTTGAA CTGGCTATTT TCCTCAGCTA CACCAAACCC AATTTGGCAT
TTAGTCAGCG GTGCAACAAT GTTTGGGGCA TTTTTTATTG CTACCGATCC GGTTACCGCT
TCAATTACAC CGAGAGGAAA ACTCATTTTC GGTGCATTAG TCGGATTATT AATCTGCTTA
ATTCGTTTTT GGGGAAATTA TCCTGATGGC GTTGCTTTTG CTATTTTACT GGCGAATATT
TGCGTGCCAC TAATTGATCA TTACACTCGT CCACGTGTTA TAGGTCATAA CAAAAAAGGA
ATCAAACAAT GA
 
Protein sequence
MFKMISSPHT HSGKLTARIM LWVIVAMLPA IAGQVYYFGF GVLIQSLLAI STALSLEFVV 
TLLRKKPKFF YIGDFSVVLT ALILAVAIPP YAPYWVIIIG TCCAVILGKH VYGGLGQNLF
NPAMVGYVIL LISFPLQMTT WLPPIQLLNE PPHFADAYKL IFQGVTTDGF NLSQLILAID
GISQATPLDT VKTAMRNNLS SLHEVSSSPI FSSVLPLGKR DIVEGMGWTQ INLLFFLGGI
FLIWKKIIHW QIPTALLATI FSFALLNWLF SSATPNPIWH LVSGATMFGA FFIATDPVTA
SITPRGKLIF GALVGLLICL IRFWGNYPDG VAFAILLANI CVPLIDHYTR PRVIGHNKKG
IKQ