| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0715 |
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| Symbol | rne |
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| ID | 4240203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | + |
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| Start bp | 762353 |
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| End bp | 765181 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638104267 |
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| Product | ribonuclease E |
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| Protein accession | YP_718927 |
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| Protein GI | 113460860 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.32082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTGATTAA TGCAACTCAA AAAGAGGAGT TGCGTGTTGC TTTAGTTGAT
GGGCAACGTT TATTTGATTT GGATATTGAA AATCCTGGAC ATGAACAAAA AAAAGCAAAT
ATTTACAAAG GTCGTATTAC TCGTGTTGAA CCGAGTTTGG AAGCCGCATT TGTTGATTAT
GGTGTAGAAA GACATGGTTT TTTACCTTTA AAAGAAATTG CACGGGAGTA TTTTCCGGAT
GATTACGTTT ATCAAGGTCG TCCGAATATT CGAGATATTT TATCAGAGGG GCAAGAAGTT
ATTGTTCAGG TTAATAAAGA AGAACGCGGT AACAAAGGAG CTGCCTTAAC AACCTTTGTG
TCTTTGGCTG GAAGTTATTT AGTCATTATG CCTAATAATC CTCGTGCAGG TGGAATTTCA
CGCCGTATTG AAGGGGATGA ACGTTTAGAA TTAAAAGAGG CATTAAGCTC TTTGGATGTG
CCTGAAGGCG TTGGCTTAAT TGTTCGTACT GCCGGTGTTG GTAAATCACC TGAAGAATTA
CAGTGGGATT TAAAAGTCTT GTTACATCAC TGGGAAGCGA TTAAACAAGC CTCTCAAAGT
CGTCCTGCCC CCTTTTTAAT TCATCAAGAA AGTGATGTGA TTGTTCGTGC TATTCGTGAT
TATTTACGCC GTGATATTGG CGAAATATTA ATTGATAGCC CGAAAGTGTA TGAGAAAGCG
AAAGCACATA TTAAATTAGT GCGTCCCGAT TTTATTAACC GAGTTAAACT TTATCAAGGT
GAAGTTCCTC TGTTTAGCCA TTATCAAATT GAATCACAAA TTGAATCTGC GTTCCAGCGG
GAAGTAAGAT TGCCTTCCGG CGGTTCCATT GTTATTGATG CTACAGAGGC ATTAACCGCA
ATTGATATTA ACTCGGCTCG TTCTACACGG GGGGGTGATA TTGAGGAAAC GGCTTTAAAT
ACAAATTTAG AAGCAGCGGA TGAGATTGCT CGTCAATTAC GTTTACGTGA TTTAGGCGGG
TTAATTGTTA TTGATTTTAT TGATATGACA CCGGTACGTC ATCAACGTGA AGTTGAAAAT
CGTATGCGAG AAGCTGTTCG TCAGGATCGT GCTAGAATTC AAATTAGCCG TATTTCACGT
TTTGGCTTAC TGGAAATGTC ACGTCAGCGT TTAAGTCCTT CATTGGGTGA GTCAAGTCAT
CATGTTTGCC CTCGTTGTCA GGGAACGGGA AAAATACGTG ATAATGAATC TTTATCATTG
TCTATTTTAC GTTTACTTGA GGAAGAAGCA TTAAAAGAAA ATACCAAACA AGTTCATACT
ATTGTTCCTG TTCAAATTGC TTCTTATTTA TTGAATGAAA AACGGAAAGC GATCCATAGT
ATTGAGAAAC GTCATAATGT TGATATTGTG GTAGCTCCGA ATGAAGCCAT GGAAACCCCG
CACTTTAGCG TTTTCCGTGT TCGTGAAGGT GAGGAAATAA ATGAGTTAAG TTATAACTTA
GCTAAATTGC ATGAAATGAA TGATGAGACT TATGTTGTTG AGGACGCTTT TATTTCTCGT
CACCTTGAAA ATTCAGCAGC AACAGTGGAA AGTGCAGTCG AGAATGCGGC GGTTTCATTA
GCTATTGAAA CTCCAGCACC AATGCCACAA GAAAGAAAAC AAGAGAGAGA ATCCTTATTG
AGACGTATTA TTGAGGGGAT TAAAAACTTG TTTGCTGATA ATTCAAGTAA AAATAAAAAA
AACAAAAATA CTCGTCAGAA TAAAAATGCT CGTCATAATC GTCGTAACCA AGATCGTCGT
TCTAGCCGTC GTATTCGTCA AGAGCATGAG ATTAAATCTG ATGAAAATAA TAAATTAGAT
ACACAGCATT CTCATTATAC TGAACGTTAT TCTAAGCATG CTAAGAAAGG CGTTGATGAT
CCGCAAATTC AGACAAAGAA AGCGGGTGAG TTGGAAATTC ATACAAAAGA TGATGAGACT
ATTGAAACAA TTCAGCCTCG TCGCCAACGT CGTGATTTGC GTAAGAAAGT TAGAGTGGAG
GAAAATTTAG TTGATACGCC AAATTTGGGA TCAACTGAAG AACACGTTGA AAATGAAAAA
ACAACAGAGC CTGTTACAAG TTTAGAACAA GCGGTTTTAC AGACAGAAAA TGAGAAAACT
CATGAACGTC AAGATAATAA CTATCGTCAT CGACGCTTAC CTCGTCATTT AAGAGTGAAT
AATCAAAGAC GTCGTCGTAA TGTAGAGTTA AAATCTGCGA TGCCTCTATT TGCTGCGGTA
GCATCTCCGG AGTTAGCGAG TGGGAAAGTT TGGGTTGATG TTAATGTAGT TAATTCAAAA
AATAACAATT TTTTATCTGT AGATGAATTA CTAAAACAGC AATATCAACA AGAGGAAATT
GAAGTTGTTA TTCCTGCTAG TGAAATCTTG ATGGATACTC AATCTGATGA TATTAAGCCT
TTAAGTAACT TTGTTAGCCA ACCAGCAAAT GAAGCAGTTG AAAAGAAAGT TCAAGAAACC
TTGCAACGTT TAACTCAAGA GGTGGTTGAC GAATCATCAA CAATCGAACG CACAGAGGTA
GATACTAATA TTTCTGTACC TGAGTTTGTA CGTGAATATC AGTTTAACGG ACGATTGGGG
ACAATTTCTG CGGTTATGCA TACGAAAGCA GAAATGACAC TTGCCAAGTC AAGTGATGAG
CCAATGCAGC CTTTCTCAAT CGTTGAATGG CAAGATTCTC GTTATTATTT CTATGGTAGA
GGAGCGGCAG GACATCATTG TGCAATCAGC CATGTTTATT CTGAACCTGC TAATACTAAA
ATAGAATAA
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| Protein sequence | MKRMLINATQ KEELRVALVD GQRLFDLDIE NPGHEQKKAN IYKGRITRVE PSLEAAFVDY
GVERHGFLPL KEIAREYFPD DYVYQGRPNI RDILSEGQEV IVQVNKEERG NKGAALTTFV
SLAGSYLVIM PNNPRAGGIS RRIEGDERLE LKEALSSLDV PEGVGLIVRT AGVGKSPEEL
QWDLKVLLHH WEAIKQASQS RPAPFLIHQE SDVIVRAIRD YLRRDIGEIL IDSPKVYEKA
KAHIKLVRPD FINRVKLYQG EVPLFSHYQI ESQIESAFQR EVRLPSGGSI VIDATEALTA
IDINSARSTR GGDIEETALN TNLEAADEIA RQLRLRDLGG LIVIDFIDMT PVRHQREVEN
RMREAVRQDR ARIQISRISR FGLLEMSRQR LSPSLGESSH HVCPRCQGTG KIRDNESLSL
SILRLLEEEA LKENTKQVHT IVPVQIASYL LNEKRKAIHS IEKRHNVDIV VAPNEAMETP
HFSVFRVREG EEINELSYNL AKLHEMNDET YVVEDAFISR HLENSAATVE SAVENAAVSL
AIETPAPMPQ ERKQERESLL RRIIEGIKNL FADNSSKNKK NKNTRQNKNA RHNRRNQDRR
SSRRIRQEHE IKSDENNKLD TQHSHYTERY SKHAKKGVDD PQIQTKKAGE LEIHTKDDET
IETIQPRRQR RDLRKKVRVE ENLVDTPNLG STEEHVENEK TTEPVTSLEQ AVLQTENEKT
HERQDNNYRH RRLPRHLRVN NQRRRRNVEL KSAMPLFAAV ASPELASGKV WVDVNVVNSK
NNNFLSVDEL LKQQYQQEEI EVVIPASEIL MDTQSDDIKP LSNFVSQPAN EAVEKKVQET
LQRLTQEVVD ESSTIERTEV DTNISVPEFV REYQFNGRLG TISAVMHTKA EMTLAKSSDE
PMQPFSIVEW QDSRYYFYGR GAAGHHCAIS HVYSEPANTK IE
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