| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0617 |
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| Symbol | menD |
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| ID | 4240103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 662150 |
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| End bp | 663856 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638104169 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_718829 |
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| Protein GI | 113460762 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.506115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCCA GCGTTTTTAA CCGTTGTTGG TCAAAAGTGA TTTTGGAAAC CTTGAGCCGT
CAAGGTGTTT CTCATTTTTG TATTGCACCG GGTTCACGCT CCACACCACT TACACTAGAA
GCTATCCGTT TACAGGAAAA CGGACGTGGC ACCTGTCATG CTCATTTCGA TGAAAGAAGC
TTAGGATTTT TCGCATTGGG AATTGCTAAA GCGAGCAAAA AACCGGTTGC TGTAATCGTT
ACATCCGGTA CAGCAACAGC TAATCTTTAC CCTGCAATTA TTGAAGCTCG CCAAACAGAT
GTGCCATTAA TTATCTTAAC TGCAGATCGT CCTCCTGAAT TGCTTGAGTG CGGTGCAAAT
CAAGCTATTT TGCAACAAAA TATGTTTGCA CAATACCCGA TCGCCAGCAT AAATCTGCCT
CGTCCAAGTC AAAACTATTC TGCTCAATGG CTAATTTCAG TTTTAGATCA GGCTTGTTTC
CGACAAAAGC AAGGGGGCGT TATTCATATC AATGTCCCTT TTGCTGAACC GCTCTATAAT
GCCAATAATG ATGAAATAGA TCTTCATCCT TGGCTCAGTA ATATTCAATC TTGGCTAACA
CAAAACAAAA ATTGGATTCA ACATCAAGAA CAACACACGG AAGTTATTAC ACATAAATAT
TGGGATCAAT GGCGAACCAA AAAAGGCATA ATTATTGTTG GACGCTTACC TTCCGAACAG
GCAATGGGAA TTGCTGAATG GGCAGACAAT ATGGGTTGGA TAATGATTAC AGACATTCAA
TCCCATGTTA AACCAACCCT ACCTTATGCA GATATTTGGC TGGCAAACCA AACTGTCAGA
AAAAAACTGT TACAAGCTGA AATCGTCATT CAATTTGGCT CAGGATTTAT TGGAAAGCGA
ATTAATCAAT TCTTAGCAGA ATTTAAAGGT GAATACTGGA TTATTGAAAA TAATCAAAAA
GCTGTTGATC CCTATCATCA TGCTCATACA CGTTTCAATG CTAAACCGCA TCATTGGTTA
CGAGCCCATC CGCCAATGCG GAAAAAACCT TGGTTACTTG AGCCTTTAGC ATTGGCTAAA
TTCTGTGCGG ACTTTATCAA ACAACGTGTC GGTTCAAATT TAAATGAGGC CTCATTGGCA
CATAATATTG AATTATTACT ACCAAAATCT AATAGCGTTC TCTTTTTGGG GAACAGTTTA
TTTGTACGCC TTGCCGATGC ACTAAGCCAA CCTTCCGCCA ATTATCCAAT TTACACTAAT
CGTGGAGCAA GTGGAATTGA TGGTTTGCTT GCGACTGCGG CAGGAATTGC TGTTGGTTCC
GAACAAACAC TGGTAGCAAT GATTGGCGAT ACTTCCACGC TATACGACTT AAACTCTTTT
GCATTATTCA AACAACTAAA CCAACCGGCA ATTATCTTTG TCATTAATAA CAATGGTGGA
GCAATCTTTG ATATGCTTCC TGTTGATATC GCAGTGAAAG AAAAATATTA CCGTATGTCG
CACTATCTTG AGTTTTCACA TATTGCGGCT ATGTTCGATC TCAAATATGC TCGCCCTTAT
ACTTGGGCTG ATCTGGCTAC GGTACTTAAA CAAGCCTACT CACGCAGAGA AACGACCGTC
ATCGAAATTA AAGTCAATCC AAATGATGGT AGCAATATCT ATAAAGATCT TATTGACAAA
ATTGGTCATG CATTAATCGG TGTTTAA
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| Protein sequence | MSASVFNRCW SKVILETLSR QGVSHFCIAP GSRSTPLTLE AIRLQENGRG TCHAHFDERS
LGFFALGIAK ASKKPVAVIV TSGTATANLY PAIIEARQTD VPLIILTADR PPELLECGAN
QAILQQNMFA QYPIASINLP RPSQNYSAQW LISVLDQACF RQKQGGVIHI NVPFAEPLYN
ANNDEIDLHP WLSNIQSWLT QNKNWIQHQE QHTEVITHKY WDQWRTKKGI IIVGRLPSEQ
AMGIAEWADN MGWIMITDIQ SHVKPTLPYA DIWLANQTVR KKLLQAEIVI QFGSGFIGKR
INQFLAEFKG EYWIIENNQK AVDPYHHAHT RFNAKPHHWL RAHPPMRKKP WLLEPLALAK
FCADFIKQRV GSNLNEASLA HNIELLLPKS NSVLFLGNSL FVRLADALSQ PSANYPIYTN
RGASGIDGLL ATAAGIAVGS EQTLVAMIGD TSTLYDLNSF ALFKQLNQPA IIFVINNNGG
AIFDMLPVDI AVKEKYYRMS HYLEFSHIAA MFDLKYARPY TWADLATVLK QAYSRRETTV
IEIKVNPNDG SNIYKDLIDK IGHALIGV
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