| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0377 |
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| Symbol | ligA |
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| ID | 4239853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 385592 |
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| End bp | 387613 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638103920 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_718587 |
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| Protein GI | 113460523 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGCAAG GAATTTTTAT GATCAAGCAA CAAATTGAAG AATTACGACA ACTATTACGC
CATCATGAAT ATCAGTATCA TGTGTTAGAC AATCCGCAAA TTCCGGACAG TGAATACGAT
CGCTTATTTC ATCAATTAAA AGCGTTGGAA CAACAATATC CTGAATATGC CAGTGAAAAT
TCGCCAACAC AGAGAGTAGG GGCGAAACCG TTAAGTAATT TTGCTCAAGT TAAACATGAT
ATTCCAATGT TATCCTTAGA TAATGCTTTT TCTGATGAAG ATTTCTTTGC TTTTGTCAAA
CGTATTCAAG ATCGTTTGAT ACATGTTCAT CATTCTTTAA CATTTTGTTG CGAACCGAAA
TTAGACGGTT TGGCAGTCAG TATTTTGTAT ATAAATGGTC AGCTGGTACA GGCTGCAACT
CGGGGCGATG GGACGACCGG TGAAGATATT ACGGCAAATA TTCGTACTAT TCGTAATATT
CCATTGCAAT TATTAACAGA TAATCCACCG GCTCGTTTGG AGGTGCGTGG GGAAGTTTTT
ATGTCGCAAG CAGGTTTTGA AAAACTGAAC AAAACAGCTT TAGCGAAAGG AGAAAAAACA
TTTGCTAATC CACGTAATGC GGCTGCAGGT TCTTTGCGTC AACTTGATCC CAAAATTACC
GGTCAACGTC CTTTGATGTT AAACGCTTAT GGTATTGGTA TTGCAGAAGG AGTGGAATTA
CCGGATACAC ATTTTGCTCG TTTACAATGG CTAAAATCTA TTGGCATACC GGTAAATAAT
GAAATTCAAT TATGTCATGG GATTGAAAAA GTGTTGGATT TCTACCGCAC TATTAAGCAA
AAACGCAGTT CCTTAGGTTA TGACATTGAT GGCACGGTAT TAAAAATTAA TGATATTGAC
TTGCAACAAC AACTTGGTTT TATTTCTAAA GCACCTCGCT GGGCAATTGC TTATAAATTT
CCGGCACAAG AAGAGCTGAC AATTTTGAAT AATGTGGAGT TTCAGGTTGG GCGAACCGGT
GCCATTACAC CGGTAGCAAA ATTAGAACCT GTTTTTGTCG CAGGAGTCAC TGTGAGTAAT
GCGACTTTAC ATAATGGTGA TGAAATAGCA CGTTTGGATA TTGCGATTGG TGATACCGTG
ATTGTGCGTC GTGCCGGAGA TGTGATTCCG CAAATTATCG GCGTGTTACA TGAACGTCGT
CCGGAAAATG CAAAATCTAT TATTTTTCCA AGCAATTGTC CTGTGTGTGA TTCCGTTATT
AGCAAAATTG AGGGAGAGGC AGTTGCTCGT TGTACGGGAG GCTTAATTTG TGCAGCTCAA
CGCAAAGAGG CACTTAAACA TTTTGTTTCA CGCAAAGCGA TGGATATTGA CGGCATTGGT
GCAAAATTAA TTGAACAGTT GGTTGAAAGG GAGTTAGTAC ATACACCGGC TGACTTATTT
AAATTAGATC AGGTTACTTT AATGCGTTTA GAGCGTATGG GAGCGAAATC GGCAGAAAAT
GCCTTAGCAA GTTTAGCTAA AGCGAAAAAA ACCACATTGG CTCGTTTTAT TTTTGCACTT
GGCATCCGTG AAGTTGGGGA AACTACTGCA TTAAATTTAG CAACTCATTT TAAGACACTA
GAGGCTTTTG AAAATGCAAC GTTTGAGCAA TTGCAAAAGG TACAAGATGT TGGTGAAGTA
GTAGCTAAAC GTATTCGTTC ATTCTGGTCT GAGCCTCATA ATGTTGCTGT GGTAAAAGAT
TTAATTGCAC AAGGCATTCA TTGGGACGAC GTTGAAGTTA AAGAGGTGCG GGACAATCCT
TTGAAAGGAA AAACCGTCGT ATTAACCGGT ACGTTAACGA AAATGGGGCG TTCAGAGGCA
AAAGAATATT TGTTGCAATT AGGCTGTAAA GTTAGCGGCA GTGTTTCGAG TAAAACGGAT
TTTGTTATTG CAGGGGAAAG TGCGGGGTCA AAATTAACTA AAGCCACTGA GCTTGGTATT
AACATTCTGA GTGAAAATGA GTTTTTGGCT TTGTTAGCAT AA
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| Protein sequence | MKQGIFMIKQ QIEELRQLLR HHEYQYHVLD NPQIPDSEYD RLFHQLKALE QQYPEYASEN
SPTQRVGAKP LSNFAQVKHD IPMLSLDNAF SDEDFFAFVK RIQDRLIHVH HSLTFCCEPK
LDGLAVSILY INGQLVQAAT RGDGTTGEDI TANIRTIRNI PLQLLTDNPP ARLEVRGEVF
MSQAGFEKLN KTALAKGEKT FANPRNAAAG SLRQLDPKIT GQRPLMLNAY GIGIAEGVEL
PDTHFARLQW LKSIGIPVNN EIQLCHGIEK VLDFYRTIKQ KRSSLGYDID GTVLKINDID
LQQQLGFISK APRWAIAYKF PAQEELTILN NVEFQVGRTG AITPVAKLEP VFVAGVTVSN
ATLHNGDEIA RLDIAIGDTV IVRRAGDVIP QIIGVLHERR PENAKSIIFP SNCPVCDSVI
SKIEGEAVAR CTGGLICAAQ RKEALKHFVS RKAMDIDGIG AKLIEQLVER ELVHTPADLF
KLDQVTLMRL ERMGAKSAEN ALASLAKAKK TTLARFIFAL GIREVGETTA LNLATHFKTL
EAFENATFEQ LQKVQDVGEV VAKRIRSFWS EPHNVAVVKD LIAQGIHWDD VEVKEVRDNP
LKGKTVVLTG TLTKMGRSEA KEYLLQLGCK VSGSVSSKTD FVIAGESAGS KLTKATELGI
NILSENEFLA LLA
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