Gene HS_0312 details

Gene Information

• Locus tag: HS_0312
• ID: 4239785
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 311761
• End bp: 312432
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638103852
• Product: TPR repeat-containing protein
• Protein accession: YP_718520
• Protein GI: 113460458
• COG category: [R] General function prediction only
• COG ID: [COG0790] FOG: TPR repeat, SEL1 subfamily

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.21253
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTACTA AGGAACATAA AATGAACCTA AAAAAATCCC TACTTATCGC CTTGCTCTCT 
TTCGGTATTG CCCAATCTGC ACTTGCCGAA ACAGATAGCG AAAAATTTGA CCGAGCTACT 
CAACTTTACA AACAACAAAA TTATTCTGCC GCTTTTCCCT TACTCAAACA ACTGGGGGAA 
AAAGGAAATG CAAAAGCACA AGCTGTGCTC GGCACAATGT ATATGTTTGG ACAGGGTATT 
ACACAAAACT CTCAACAAGC CGTCTATTGG TGGACAAAAG CCGCTGAACA GGGAGCTGCA 
GAAGTACAGG CTATGCTCGG CTTTATGTAT GAAAACGGAC GAGGTGTGAC GCAAAACCAT 
CAACAAGCCG TCTATTGGTT CATAAAAGCT GCCGGACAGG GATTGGCAGA TGCTCAATTC 
AATCTCGGCA TGATGTATGA ATTAGGACGA GGTGTTACAC AAAACTCTCA ACAAGCCGTC 
TATTGGTTCA TAAAAGCTGC CGAACAGGGA TTGGCAGATG CTCAATTCAA TCTCGGCATG 
ATGTATGAAT TAGGACGAGG GGTGCTAACA CATGTTTCTA CAGCTAAAGC ATTCTACGGT 
CAAGCATGTG ATAACGGCAA CGCTCAAGGA TGTAAAGATT TCGCCAGATT AGATAAACAG 
GGTGTGCGTT AA 

 

Protein sequence

MTTKEHKMNL KKSLLIALLS FGIAQSALAE TDSEKFDRAT QLYKQQNYSA AFPLLKQLGE 
KGNAKAQAVL GTMYMFGQGI TQNSQQAVYW WTKAAEQGAA EVQAMLGFMY ENGRGVTQNH 
QQAVYWFIKA AGQGLADAQF NLGMMYELGR GVTQNSQQAV YWFIKAAEQG LADAQFNLGM 
MYELGRGVLT HVSTAKAFYG QACDNGNAQG CKDFARLDKQ GVR