| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_C0038 |
|---|
| Symbol | |
|---|
| ID | 4206692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008265 |
|---|
| Strand | + |
|---|
| Start bp | 26793 |
|---|
| End bp | 27155 |
|---|
| Gene Length | 363 bp |
|---|
| Protein Length | 120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | |
|---|
| Product | Helix-turn-helix domain protein |
|---|
| Protein accession | YP_699966 |
|---|
| Protein GI | 110804036 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 0.000000109438 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATAACA GAGTAAAGGA ATTAAGAAAA TCACTAGGTC TTACTCAAAA CGAATTTGCT
GATAAAATAA ATATGAGCCG AAGCAACTTT GGTTCGATTG AAACCGGAAG AGTTAACTTA
ACTGATAGAG TAATAAATGA CATATGCAAA GCATTTTCAG TTAATAAAAC ATGGTTAACT
TCTGGTGAAG GCGAAATGTA TGATATAATA GATAGTGATG AACAGTTTCA CAGGATCTTA
GGTGAATGGT TAGTAAATTG TGATCAGGTT ACTAAAGATA CTGTTCTTTC TCTAAACCAA
CTGACTAGAG AAGAATTCGA GTTTGTATCT CGAATGTTAA AAAATCTTTC TCAAAACAAA
TAA
|
|---|
| Protein sequence | MNNRVKELRK SLGLTQNEFA DKINMSRSNF GSIETGRVNL TDRVINDICK AFSVNKTWLT
SGEGEMYDII DSDEQFHRIL GEWLVNCDQV TKDTVLSLNQ LTREEFEFVS RMLKNLSQNK
|
|---|
| |