| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_B0004 |
|---|
| Symbol | |
|---|
| ID | 4206641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008264 |
|---|
| Strand | + |
|---|
| Start bp | 4586 |
|---|
| End bp | 5614 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642567236 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase domain-containing protein |
|---|
| Protein accession | YP_699923 |
|---|
| Protein GI | 110804011 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 207 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG CTATACGTGG TGGACATAAC TTTTTAGCAA AAGGTGCTTG TGGGTTAATA
GATGAAACTA TAGAAGATAG AAAAGTTTAT AAAGCTGTTA TTAAAAACTT AATTGAAAAT
AATTTTGAAG TTTTAGATGT TACTCCAGAT GACTGTGATG TAAATACAGA CTTAAAATTT
GGAGTAGAAA AAGCTAATAA TTTTAATGCA GATTTATTCG TTTCTATACA CTTTGATAAA
TGTTATGACA AATTTGATGG TCCTTTAGGT ACAGGAACTT GGGTTTGTGA AAAAGGGGGA
AAAGCAGAAA TATATGCTCA AAATATAGTA GATACAATCT CTGAAGGAAC TTCCTTAAAA
AATAGGGGAG TTAAAACTAA TGCTAAGCTT TATGAATTAA ATAAAACAAT CATGCCAGCT
GTAATAGTTG AAGTTTGTTT CTGCGAATCT AAAGTAGATG TAGATATTTA TAGAGAAAAA
GGGTCTGATT TAATTGGTTA TTTAATAGCT AAAGGAATTT GTAAATCTGT AAATAAAGAA
ATTAGTTCTG ATTTGCCTCA AGTTAATCTT GAGAACACTA CTAATTCACA AAATAATAAT
TTATTTAAAA CTAATGCAAC AGCAAAGGTT GCTTTAGATC CTAGGGATAA CCCTAGTAAT
AACTACAAAG ATTTAGGTGA AATCTATGCA AATGAAAGAA TAAAAATTTT AGCTGAAGTT
TGTGATTTAA AATTTTTCTT ACCAGCAACA TATTGGCAAG ATGCATTAAA TAAAGAATCT
TCTCCTATAT GGGTAAATTC AAAACAGACA GTACTTAATG TTGATACCAA TGCAACTGTA
ATCAATGTTT TAACCGAATT AGATGCTAGA TATACTCCTT CTCCTGATTC AAATAGAATG
GGATATGTAA AAAATCAAGA AAGACTTTTT GTTCATAAAA TTGAAAATAA TTATGCTTTA
GCTACTTACT TAGCTAGTGA AGGATATAAA ACAGCATGGT TTACAGCAGA GTATATAAAA
TTAGATTAA
|
|---|
| Protein sequence | MKIAIRGGHN FLAKGACGLI DETIEDRKVY KAVIKNLIEN NFEVLDVTPD DCDVNTDLKF
GVEKANNFNA DLFVSIHFDK CYDKFDGPLG TGTWVCEKGG KAEIYAQNIV DTISEGTSLK
NRGVKTNAKL YELNKTIMPA VIVEVCFCES KVDVDIYREK GSDLIGYLIA KGICKSVNKE
ISSDLPQVNL ENTTNSQNNN LFKTNATAKV ALDPRDNPSN NYKDLGEIYA NERIKILAEV
CDLKFFLPAT YWQDALNKES SPIWVNSKQT VLNVDTNATV INVLTELDAR YTPSPDSNRM
GYVKNQERLF VHKIENNYAL ATYLASEGYK TAWFTAEYIK LD
|
|---|
| |