| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2642 |
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| Symbol | sdhB |
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| ID | 4204827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 2866997 |
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| End bp | 2867677 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 642567190 |
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| Product | L-serine dehydratase, iron-sulfur-dependent, beta subunit |
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| Protein accession | YP_699877 |
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| Protein GI | 110803155 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATACAT ATGGTGTTTT CGATATCCTT GGACCAATTA TGATTGGACC ATCTAGCTCT
CATACTGCAG GGGCTGCTAG ACTTGGAAAA GTAGCTAGAG CAATCTGTGG TAAACCAATG
AAAAAAGTTA CTTTTCTTTT ACACGGTTCT TTTGGCAAAA CTTATAAAGG TCATGGTACA
GATAAAGCTT TAGTGGCAGG TATCCTTGGA ATGGAACCTT ATGATACAAA ACTTAGAAAT
TCTTTAGAAA TAGCAAAAGA AAAAAATATT GAAATAGAGT TTAAAGAAGT TGATTTAGGA
GATGCACATC CTAATACAGT TAAATTTATA ATTGAAGATA TTGATGGTGT TTTTCATGAA
ATAGTAGGAT CATCAATAGG TGGTGGAAGT ATTAAAATCA CTGAGGTAAA TGGTAGCGTT
GTTGAATTTA CTGGTGAATA CCCAACACTA ATAATCTCAC ATAAAGATGT TCCTGGAGCT
GTTTCTAAAG TAACAGCAAT AGTTTATGAG CATAATATTA ATATAGCTTT CATGAAAGTC
TTTAGAACAG AAAGAGGAAA GGCTGCAAGA ATGGTCTTTG AAATGGATAG TCCTATTACA
AAGGACATTA TTGATGAAAT TAAGAAAGTT GAAGCTGTTG AAAAACTAGT TGTTATAAAC
CCAGTAAAGG AGGATATTTA G
|
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| Protein sequence | MNTYGVFDIL GPIMIGPSSS HTAGAARLGK VARAICGKPM KKVTFLLHGS FGKTYKGHGT
DKALVAGILG MEPYDTKLRN SLEIAKEKNI EIEFKEVDLG DAHPNTVKFI IEDIDGVFHE
IVGSSIGGGS IKITEVNGSV VEFTGEYPTL IISHKDVPGA VSKVTAIVYE HNINIAFMKV
FRTERGKAAR MVFEMDSPIT KDIIDEIKKV EAVEKLVVIN PVKEDI
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