| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2418 |
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| Symbol | sigH |
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| ID | 4205858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2636943 |
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| End bp | 2637590 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642566966 |
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| Product | RNA polymerase factor sigma-70 |
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| Protein accession | YP_699680 |
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| Protein GI | 110802727 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02859] RNA polymerase sigma-H factor
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000693947 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGGATTA CTTATGATTT GGCCAAAATA AATAATTATG AAGAATTTAA AGATTTAACA
GATAAAGAAG TAGTTATGTT AGCTAAAAAC GGTGATAATA TGGCTCAAGA ATATGTAATA
AGTAAGTATG AGCAGTTTGT AAAAGCTAAA TCTAAATCAT ATTTTCTTAT AGGAGCAGAT
AAAGAAGATA TATATCAAGA GGGAATGATT GGATTATATA AAGCGATAAG AGATTTTAAT
CCAGATAAGT TTGCATCATT TAGAAGTTTT GCAGAACTTT GTGTTACAAG GCAGATAATA
ACTGCTATAA AAACTGCAAC AAGGCAAAAA CATATCCCAT TAAACACTTA TATTTCTTTA
AGCAAACCTA TCTACGAGGA AGAATCTGAT AGAACGCTTT TAGATACTGT AGTAGGAATA
ACAATTACAG ATCCTGAATC ATTGATCATA GGTAAAGAAG AGGTTGAAAA AATAGAAAGT
GCAATTAATA GTGTGCTTTC TGAACTAGAA TTAGAGGTGT TAAATTCTTA TTTAGATGGT
AAATCATATC AAGAAATTGC CTGTGATTTA GATAGAGAAG CTAAATCTAT AGATAATGCA
TTACAACGTG TAAAAAGAAA GCTTGAAAAA TGTTTAAACA TTAAATAA
|
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| Protein sequence | MGITYDLAKI NNYEEFKDLT DKEVVMLAKN GDNMAQEYVI SKYEQFVKAK SKSYFLIGAD
KEDIYQEGMI GLYKAIRDFN PDKFASFRSF AELCVTRQII TAIKTATRQK HIPLNTYISL
SKPIYEEESD RTLLDTVVGI TITDPESLII GKEEVEKIES AINSVLSELE LEVLNSYLDG
KSYQEIACDL DREAKSIDNA LQRVKRKLEK CLNIK
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