Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_2408 |
Symbol | rpoB |
ID | 4204908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2627963 |
End bp | 2631667 |
Gene Length | 3705 bp |
Protein Length | 1234 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 642566956 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_699671 |
Protein GI | 110801957 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0154863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTACATC CTGTCCAAGT TGGAAAAAGA ACGAGAATGA GCTTTGCAAA AGTCAAAGAC GTGGCTGAAA TGCCAAACCT AATTGAAATT CAATTAGATT CTTACAAATG GTTTTTAGAT GCAGGACTTT ATGAAGTTTT TGATGATATT AATCCTATCT CAAACTTTAC TGGAAATCTT GTACTTGAGT TTGTAGGGTA CACTCTAGAT ATGGATAACA TAAAATATTC AGTTGAAGAG TGTAAAGAAA GAGACACTAC TTATGCTGCA CCGCTAAAAG TAGCTGTAAG ACTTCAAAAC AAAGAAACTG GAGAAATAAA AGAACAAGAG GTATTTATGG GAGATTTCCC ATTAATGACA GAGCAAGGAA CTTTTATAAT CAATGGTGCC GAAAGAGTTA TTGTTTCTCA GTTAGTAAGA TCACCAGGTG TTTACTACAA TTATAATGTA GATAAAACTG GTAAAAAACT GTTCTCTGCA ACAGTAATAC CTAACAGAGG TGCGTGGTTA GAGTATGAAA CAGATTCAAA TGATGTTATC TATGTAAGAA TAGATAAAAC AAGAAAACTT CCTATAAGTA TACTAGGAAG AGCTATGGGC TTTGGAAGCG ATCAAGAACT TCTTGAGTAT TTTGGTGAAG AAGAAAGATT CAAAGCTACA ATAGAAAAAG ATAATACTAA GACTAAAGAA GAAGCATTAT TAGAAATCTA TAAGAGATTA AGACCAGGTG AACCACCTAC AGTTGATAGT GCAATTAGTT TAATAGATTC TTTATTCTTC GATGCTAAGA GATATGACTT ATCAAGAGTT GGTAGATACA AGTTTAACAA AAAACTTGCA ATTGGTTTAA GAATAGCTAA CCAAATAGCA GCAGAAGATA TAGTAGATAA ATTAACTGGT GAAGTTTTAG TTGCAAAAGG TGAAAAAATA TCAAGAGCTA ATGCTGAAGA AATTCAAAAT AGAGGAATAA ATTCAGTTGA TGTTTTAGTT GAAGACAGAG TAATTAGAAT TATTGGTAAC CACTTTGTAG ATATACATAA GTGTGTGGAC TTCGATATAT CAGATTTAAA TATCAGAGAA TTAGTTCACT ACCCAACATT AAGAGAGATC TTAGACAACT ATTCTGATGA AGAAACTATA AAAGAAGAAA TCAAAAAGAA TATGACAAGA CTTATTCCTA AGCACATCAT CAAAGATGAT ATATTCGCTA CAATAAGTTA CCAAATTGGC TTAGCTTATA ATATTGGATA TGTTGATGAT ATAGACCACT TAGGAAACAG AAGATTAAGA AGTGTTGGTG AGCTTTTACA AAATCAATTT AGAATTGGTT TATCAAGAAT GGAAAGAGTA GTTAAAGAGA GAATGACTAT TCAAGACCAA GAAGCTATAA CACCACAACA ATTAATCAAT ATAAGACCAG TAGCAGCAGC TATAAAAGAG TTCTTTGGAA GCTCACAGTT ATCACAGTTC ATGGATCAAA CAAACCCATT ATCTGAGTTA ACTCATAAGA GAAGATTATC AGCTCTTGGA CCAGGAGGTC TTTCAAGAGA AAGAGCTGGT TTCGAAGTTA GAGACGTTCA CCACTCTCAT TATGGTAGAA TGTGTCCTAT CGAAACTCCA GAGGGACCAA ACATAGGTCT TATAAACTCA TTAGCTACAT ATGCTAAAGT TAATGAGTAT GGCTTTATTG AAACTCCTTA TAGAGTTGTA GATAAATCAG AAGGTAGAGT AACTGGTGAA ATAAGATACT TTACTGCAGA TGAGGAAGAC CAATACCTAG TAGCTCAGGC TAATGAACCA TTAGACGAAA ATGGATGCTT TATTGATAAG AAAGTAACTG TTAGAGATAA AGGTGAGGTA TTAGTAGTTC CAAGTAAGGA TGTTGACTTA ATGGACGTTT CTCCAAGACA GCTAGTATCT GTTGCAACAG CAATGATACC TTTCTTAGAG AATGACGACG CATCAAGAGC CCTAATGGGA TCAAACATGC AACGTCAAGC AGTTCCTTTA TTAAAACCAT ATGCTCCAAT AGTTGGTACT GGAATAGAAT ACAAAGCAGC TGTAGATTCA GGGGTTCTTC CTAAAGCTAA AAATGCTGGT GAAGTAGTTT ATGTAAGTGC TAACGAAGTA AGAGTTAAGA GAGAATTAGA TGGTGGTGTT GATACTTATA GACTTCTTAA ATTCAAGAGA AGTAACCAAG GTACTTGTAT AAACCAAAGA CCAATAGTGG CTAAAGGTGA CTGGGTACTT AAAGGTGAAG TATTAGCAGA TGGACCTTCA ACTGATTTAG GAGAAATAGC TTTAGGTAAA AACATAAGAA TGGGATTCAT TACTTGGGAA GGATATAACT ACGAGGATGC TATGCTTATC TCAGAAGAGT TAGTTAGAGA AGATGTATTT ACATCAATCC ATATAGAAGA ATATGAATGC GAAGCTAGAG ATACTAAATT AGGACCAGAA GAAATAACTA GAGATATTCC AAACGTAAGT GAGGATGCTT TAAAAGATAT AGATGAAAGA GGTATAATCA GAATCGGTGC TGAGGTAAGA TCAGGAGATA TTCTTGTTGG TAAAGTAACA CCAAAAGGAG AAACTGAACT TACTGCTGAG GAAAGACTAT TAAGAGCTAT CTTTGGTGAA AAAGCTAGAG AAGTTAGAGA TACTTCTTTA AGAGTTCCAC ACGGGGAAGC TGGTATAATA GTAGATGTAA AAGTATTTAC AAGAGAAAAT GGTGATGATT TATCACCAGG AGTTAATGAA CTTGTAAGAT GTTACATTGC TCAAAAGAGA AAAATATCTG TTGGAGATAA GATGGCTGGT CGTCACGGTA ACAAAGGGGT TATCTCAAGA GTATTACCAG AAGAAGATAT GCCATTCTTA CCAGATGGTA GACCACTTCA AATATGCTTA AACCCACTAG GGGTTCCATC TCGTATGAAC ATCGGTCAGG TATTAGAGGT TCACTTAGGA TGGGCTGCAA GTGCATTAGG ATGGCACATT GCTACACCAG TATTTGATGG TGCTACAGAA ACTGATATAG AAGATTGCTT AGAAAAAGCA GGATACAATA GAAACGGAAA AACAGTTTTA AGAGATGGTA GAACTGGTGA AGAGTTTGAT AACGAAGTAA CAGTTGGTAT AATGTACATC TTAAAACTTG CTCACTTAGT TGATGATAAG ATCCATGCTA GATCAACAGG ACCTTACTCA TTAGTAACTC AACAGCCACT TGGTGGTAAG GCACAATTCG GAGGACAAAG ATTCGGAGAG ATGGAGGTTT GGGCATTAGA AGCATACGGT GCTGCTCATA CTCTTCAAGA AATACTTACT GTTAAGTCAG ATGATGTTGT AGGTAGAGTT AAAACTTACG AAGCTATTGT TAAAGGTGAA AACATTCCTG AACCAGGAGT GCCAGAATCA TTTAAGGTTC TTATTAAAGA ACTTCAAGCT TTATGCTTAG ACGTTAAAGT TTTAAATGAT AATAACCAAG AAGTTAAATT CAAAGAATTA GCTGAAGATG ATGATGAAAT CGAAGTATTA GAAGTTAACA TGGAAGGTAC TGAAGATTCA ACAACAGAAG AAGCTAAAGA GGAAAAAGGG GAAGCATACA TCCCAGCAGA AGAAATTGAT GAAGAAATAG ACTATGAAAA CATAGACTTA TTAGACTTCA CAAGTGATTT AGACATAGAA GATGATTTTA ACTAG
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Protein sequence | MVHPVQVGKR TRMSFAKVKD VAEMPNLIEI QLDSYKWFLD AGLYEVFDDI NPISNFTGNL VLEFVGYTLD MDNIKYSVEE CKERDTTYAA PLKVAVRLQN KETGEIKEQE VFMGDFPLMT EQGTFIINGA ERVIVSQLVR SPGVYYNYNV DKTGKKLFSA TVIPNRGAWL EYETDSNDVI YVRIDKTRKL PISILGRAMG FGSDQELLEY FGEEERFKAT IEKDNTKTKE EALLEIYKRL RPGEPPTVDS AISLIDSLFF DAKRYDLSRV GRYKFNKKLA IGLRIANQIA AEDIVDKLTG EVLVAKGEKI SRANAEEIQN RGINSVDVLV EDRVIRIIGN HFVDIHKCVD FDISDLNIRE LVHYPTLREI LDNYSDEETI KEEIKKNMTR LIPKHIIKDD IFATISYQIG LAYNIGYVDD IDHLGNRRLR SVGELLQNQF RIGLSRMERV VKERMTIQDQ EAITPQQLIN IRPVAAAIKE FFGSSQLSQF MDQTNPLSEL THKRRLSALG PGGLSRERAG FEVRDVHHSH YGRMCPIETP EGPNIGLINS LATYAKVNEY GFIETPYRVV DKSEGRVTGE IRYFTADEED QYLVAQANEP LDENGCFIDK KVTVRDKGEV LVVPSKDVDL MDVSPRQLVS VATAMIPFLE NDDASRALMG SNMQRQAVPL LKPYAPIVGT GIEYKAAVDS GVLPKAKNAG EVVYVSANEV RVKRELDGGV DTYRLLKFKR SNQGTCINQR PIVAKGDWVL KGEVLADGPS TDLGEIALGK NIRMGFITWE GYNYEDAMLI SEELVREDVF TSIHIEEYEC EARDTKLGPE EITRDIPNVS EDALKDIDER GIIRIGAEVR SGDILVGKVT PKGETELTAE ERLLRAIFGE KAREVRDTSL RVPHGEAGII VDVKVFTREN GDDLSPGVNE LVRCYIAQKR KISVGDKMAG RHGNKGVISR VLPEEDMPFL PDGRPLQICL NPLGVPSRMN IGQVLEVHLG WAASALGWHI ATPVFDGATE TDIEDCLEKA GYNRNGKTVL RDGRTGEEFD NEVTVGIMYI LKLAHLVDDK IHARSTGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAHTLQEILT VKSDDVVGRV KTYEAIVKGE NIPEPGVPES FKVLIKELQA LCLDVKVLND NNQEVKFKEL AEDDDEIEVL EVNMEGTEDS TTEEAKEEKG EAYIPAEEID EEIDYENIDL LDFTSDLDIE DDFN
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