Gene CPR_2398 details

Gene Information

• Locus tag: CPR_2398
• Symbol: rplD
• ID: 4206355
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2615996
• End bp: 2616610
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 642566947
• Product: 50S ribosomal protein L4
• Protein accession: YP_699662
• Protein GI: 110803426
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000730975
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTAAAG TAGGTTTATT TAATAAAGAA GGACAACAAG TTGGAGATAT CCAATTAAAT 
GAGCAAGTAT TCGGAGTAGA AGTAAACAAA TATGCTTTAC ACCAAGTAGT AGTAGCTCAA 
TTAGCTAACA AGAGACAAGG TACTCAATCA GCTAAAACAA GATCTGAGGT AAGAGGAGGC 
GGAATCAAGC CTTGGAGACA AAAAGGAACA GGTAGAGCAA GACAAGGTTC TATCAGAGCG 
CCTCAATGGA TCAAAGGTGG AGTTGTATTT GCACCAAAAC CAAGAGATTA CAGAATGTCA 
ATACCAAAGA GCATGAGAAA AGTAGCTATG ACTTCTGCTT TAACTAGCAA AGTTGCAGAT 
ATGGTTGTTT TAGAAGACTT AAATTTCGAA GCTCCAAAAA CTAAGGAAGC AGTTAAAATG 
TTAAATGCTT TCGAAGCTAA GAAGACATTA ATAATAACAG CTGAAGTTAA TGAAAATGTA 
TATAAATCAG CAAGAAACAT AGAAGGTGTA ACAGTTATGC CTGTTAACAA CATCAATGTT 
TATGATTTAT TAAACTGCAA AACATTAATG ATAACTAAAG AAGCTGTAAA CAAAATTGAG 
GAGGTGTACG CATAA 

 

Protein sequence

MPKVGLFNKE GQQVGDIQLN EQVFGVEVNK YALHQVVVAQ LANKRQGTQS AKTRSEVRGG 
GIKPWRQKGT GRARQGSIRA PQWIKGGVVF APKPRDYRMS IPKSMRKVAM TSALTSKVAD 
MVVLEDLNFE APKTKEAVKM LNAFEAKKTL IITAEVNENV YKSARNIEGV TVMPVNNINV 
YDLLNCKTLM ITKEAVNKIE EVYA