Gene CPR_2371 details

Gene Information

• Locus tag: CPR_2371
• Symbol: rpsD
• ID: 4206560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2603242
• End bp: 2603862
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 642566920
• Product: 30S ribosomal protein S4
• Protein accession: YP_699635
• Protein GI: 110801849
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.210121
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATACTGGAGC TACATGTAAG TTATGTAGAA GAGAAGGTAT GAAATTATTC 
CTAAAAGGGG ATAGATGTTA TACAGATAAA TGTGCTTTCG TTAGAAGAAG TTATGCACCA 
GGACAACACG GAGCAAGCAG AAAGAAATTA TCTAACTACG GAACACAATT AAGAGAGAAG 
CAAAAAGCTA AGAGAATATA CGGAGTTCTT GAAGGTCAGT TCAGAAACAC ATATGAAAGA 
GCTGAAAAAA TGAGAGGAAT TGCCGGTGAA AACTTACTTA AATTATTAGA AATGAGATTA 
GATAACGTTG TTTACAGATT AGGATATGGT GCTTCAAGAA CAGAAGCTAG ACAATTAGTA 
AACCATGGTC ATTTCTTAGT AAATGGTAAA AAAGTTGATA TAGCATCATT CAAAGTATCA 
GTTAACGATG TTATAACAGT TTGTGAAAAG AGCAGAGGAT CAGAAAGATT CAAAATGTTT 
GCTGAAAATC CAAAAGCTTT ACCAAAATGG TTAGAAGCTA ACGTTGAAAA CTTCGAAGGT 
AAAGTTATTG CTGAGCCTGC AAGAGAAGAT ATCGACGTAC CAGTTAACGA GACTCTAATC 
GTCGAGTTAT ACAGCAAATA A 

 

Protein sequence

MARYTGATCK LCRREGMKLF LKGDRCYTDK CAFVRRSYAP GQHGASRKKL SNYGTQLREK 
QKAKRIYGVL EGQFRNTYER AEKMRGIAGE NLLKLLEMRL DNVVYRLGYG ASRTEARQLV 
NHGHFLVNGK KVDIASFKVS VNDVITVCEK SRGSERFKMF AENPKALPKW LEANVENFEG 
KVIAEPARED IDVPVNETLI VELYSK