Gene CPR_2353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_2353 
Symbol 
ID4205534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp2582960 
End bp2584966 
Gene Length2007 bp 
Protein Length668 aa 
Translation table11 
GC content28% 
IMG OID642566903 
Productphosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator 
Protein accessionYP_699618 
Protein GI110803061 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR01003] Phosphotransferase System HPr (HPr) Family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATTCAA GAGAATTGAT TATAAAGACG CCCTTAGGAT TACACACTAG ATACTCTGCT 
ATGATTGTTA ATAAGGCTTC TGAAATAGAG TCTAAGTATA AAGTTAAACT CTATATAAAA
AAAGAATCTT ATACAGATTG GCTTGGAATA AGTATGCTTG CAATACTTTC TCTTAAGGTG
TTGCCTAATG AAAGTATATT AATTGGATCT AAAAATGAAG GAATGATTGA AAAGTTAGCT
GTTCAATCTC TTCTTGAGTT TATTGATAAA AACATAAATA ACCCTATTGA ATCTGAAGAT
AGTGAAATAG ATGAAATAAT AGATGCTAGC ATAGTAGCTA ATGAGCAGGT TCTTGAAAGT
TTACCAATAG GTATTGTTGT TATAGATATA GATCAAAATA TAATAACAAT TAATCAATAT
GCTTTAAGAT TTATTGGATG CAATAAAAAA GATGTTAAAG GAAAAAAGAT TAATGAAGTT
ATTCCATCAT CTCAGCTTCC TCATGTTATG CTTAGTAATT TAAAAAAGTA TGGTTCAACT
CTTCATATAA ATAACAGAGT TGGCTTAGTA AATAGCTCTC CTCTTTTCAT AAACGATAAG
ATTATAGGGG CTATAAGTGT TATTCAAGAT GTATCTGATA TTATAGGTAT GAAAGAAATA
AATGAGAAAT TTACTAAGAT ACTTGAAAAC TCACAGGATA TGATTTGCTT TGTAGATGAA
AATGGCATAA TAAATTATTT AAATCCTGCA TATATTAAAA ACTTTTCTAA AGTTAGTTCT
GATGTTATAG GAAAAAGTAT TTTTGATATT GCTCCTAATG GACTTAGAGC TAAAGTATTT
AAAGAAAAAA CTTTATTAAA AGATGTAATT CATAAGAAAA ACGGTATAAA TGTTATAAGT
ACTATTGATC CTTTATTTAT TGATGGTCAG TTTAAAGGAG TTATTTCTAC TTCTAGACCA
GTTAGTTTAA TTAAAGAACT TATGTCAAAA CTAAATAAGT CTGAACAAGA ATTAGATTAT
TATAAAAATG AGTTTTTAAG ACAGTTATCT AAAAATTCTT CTTTTAATAA TATTATAGGT
TCAACTAGAA CTCTAAAGGA TATAATGTAC ATGTGTCAAA AAGCTTCAGA AACTACATCA
ACTGTTCTTA TTCGTGGTGA AAGTGGTACA GGTAAGGAAC TTATTGCAAA GGCTATACAC
AATAATAGTA ATAGAAAAAA TAAGCCTTTT GTAAGGGTTA ACTGTGCTTC AATTCCTGAA
AATCTCTTAG AAAGTGAATT ATTTGGATAT GAAAAGGGAG CTTTTACTGG GGCAGTTCAA
AGCAAACCTG GTAAATTTGC TATTGCTGAT ACAGGTACTA TATTCTTAGA TGAAATAGGT
GATATGCCCT TATCAATGCA AGTTAAACTC CTTAGAGTTT TACAAGAAAG AGAGATTGAA
AGTGTTGGAG GAATAACTCC TAAAAACATT GATGTAAGAG TTATTGCTGC AACTAATAGA
AATTTAGAAG AAATGATTGA AGATGGTTCC TTTAGAGAGG ATCTTTATTA CAGACTTAAT
GTCTTAGGTA TTAATCTTCC TCCACTTAGA GAACGTAAAG AAGATATTCC TGAACTTGCC
GAACATTTTA TAACTAAGCT AAATAAAAAA TTACATAAAA CTATATTAGG AATAAAACAA
GATGCCCTTA ATCTACTAAT TGAGTATTCT TGGCCTGGAA ATATACGTGA GCTTGAAAAT
ATAATGGAAA GAGCAATAAA TCTTTGTGAT GGAGATTATA TAGATAGTTC TTATCTGCCT
TCATATTTAA AGCCAGTTGA ATCAAAGTCT TTTAATTTAA ATATTGATAT TGATCATATA
CTTCCTTTTG AAGAATATGA AAAACAAATA ATAGAAGCAG CTATGAAGAA GTACAAATCC
TTTAATAAGG CTGGAAAAGC TTTAGGATTA ACTCATAGAA CAGTTTCTTT AAAATGTAAA
AAGTATAATA TAGAGGTAAA AAAATAA
 
Protein sequence
MYSRELIIKT PLGLHTRYSA MIVNKASEIE SKYKVKLYIK KESYTDWLGI SMLAILSLKV 
LPNESILIGS KNEGMIEKLA VQSLLEFIDK NINNPIESED SEIDEIIDAS IVANEQVLES
LPIGIVVIDI DQNIITINQY ALRFIGCNKK DVKGKKINEV IPSSQLPHVM LSNLKKYGST
LHINNRVGLV NSSPLFINDK IIGAISVIQD VSDIIGMKEI NEKFTKILEN SQDMICFVDE
NGIINYLNPA YIKNFSKVSS DVIGKSIFDI APNGLRAKVF KEKTLLKDVI HKKNGINVIS
TIDPLFIDGQ FKGVISTSRP VSLIKELMSK LNKSEQELDY YKNEFLRQLS KNSSFNNIIG
STRTLKDIMY MCQKASETTS TVLIRGESGT GKELIAKAIH NNSNRKNKPF VRVNCASIPE
NLLESELFGY EKGAFTGAVQ SKPGKFAIAD TGTIFLDEIG DMPLSMQVKL LRVLQEREIE
SVGGITPKNI DVRVIAATNR NLEEMIEDGS FREDLYYRLN VLGINLPPLR ERKEDIPELA
EHFITKLNKK LHKTILGIKQ DALNLLIEYS WPGNIRELEN IMERAINLCD GDYIDSSYLP
SYLKPVESKS FNLNIDIDHI LPFEEYEKQI IEAAMKKYKS FNKAGKALGL THRTVSLKCK
KYNIEVKK