Gene CPR_2024 details

Gene Information

• Locus tag: CPR_2024
• Symbol: deoC
• ID: 4206061
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2230559
• End bp: 2231233
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 642566574
• Product: deoxyribose-phosphate aldolase
• Protein accession: YP_699333
• Protein GI: 110803850
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0274] Deoxyribose-phosphate aldolase
• TIGRFAM ID: [TIGR00126] deoxyribose-phosphate aldolase

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAAC AACAATTAGC AAAAATGATA GACCACACTA TATTAAAACC AGAAGCTGAT 
AAGGCATCAA TAGAAAAGCT TTGCAAAGAA GCTTTAGAAT ACAATTTTGC TTCAGTTTGC 
ATAAACCCTA CTAATGTAGA ATTAGCAGCT AAACTTTTAA AAGGCAGCGA AGTAAAGGTT 
TGTACAGTAA TAGGTTTCCC TTTAGGAGCA AACACTATGG AAGTTAAAGC TTTTGAAACT 
AAAGATGCAA TAGCAAAAGG TGCAGACGAA GTTGATATGG TTATAAACAT AGGAAGATTA 
AAAGATAAGG ATTATGAATA TGTAGAGAAA GATATAAAAG CTGTTGTAGA TGCGGCTGAT 
AAGAAAGCGG TTACAAAAGT TATAATAGAA ACTTGTCTTT TAACTGAAGA AGAAAAAGTT 
AAAGCTTGTG AATTAGCTAA AAAAGCAGGA GCAGATTTCG TTAAAACATC AACTGGATTC 
TCAACAGGTG GAGCAACTCC GGAAGATATT AAATTAATGA GAGAAACTGT AGGACCAGAT 
ATGGGAGTTA AAGCATCAGG TGGAGTAAGA TCAATAGAAG ATGCTGAAGC TGTAATCAAA 
AATGGTGCTA CTAGAATAGG AGCATCAGCT TCAATAGCTA TATGTGAAGG TAAAGTTTCA 
GATTCAACAT ATTAA 

 

Protein sequence

MDKQQLAKMI DHTILKPEAD KASIEKLCKE ALEYNFASVC INPTNVELAA KLLKGSEVKV 
CTVIGFPLGA NTMEVKAFET KDAIAKGADE VDMVINIGRL KDKDYEYVEK DIKAVVDAAD 
KKAVTKVIIE TCLLTEEEKV KACELAKKAG ADFVKTSTGF STGGATPEDI KLMRETVGPD 
MGVKASGGVR SIEDAEAVIK NGATRIGASA SIAICEGKVS DSTY