| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1924 |
|---|
| Symbol | |
|---|
| ID | 4205370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2127406 |
|---|
| End bp | 2128812 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 642566474 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_699234 |
|---|
| Protein GI | 110802822 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TTAGTGTGGT TTTTAAAGAG GATTTATGTA AATACTTAAT AATATACGAT
AATATTAAAA GTTTAATTGA AAATGGGGAA ATATCAGAAG GAGAAAAGTT ACCAACTATA
AGAGAGTTAG CAGACTTTTT AGAAGTTAAT AAGGTAACTG TCATTAATGC TTATAAGAAA
CTTGTACAAG AAGGATATGC ATATCAATCC CAAGGAAGTG GAACTTATGC TAAAAATAAG
GAGGTAGGAA AAAGTTTTAA GCATGATTAT AATGATTTAT TTAGAAAAAT AGCCTCTGGA
GATTTAAAAA ATTGGATAGA CTTTACTGGG GAAACTACTA GTGCAAACTT CTTCCAAGTA
GAAAAACTTA AGAAAGTTTT AGACAATGTA TTAGTTAGAG ATGGTGTAGA GGCACTAATG
TATAGTGATC CTTTAGGCTA TTTAGAACTA AGAAGAAGTA TAAATGAAGA GTTTTGGAAT
GGAAAAAATA ATTTAGATAA TATACTTATA ATTTCTGGAG CTCAGCAAGG TATTGATATT
GTAGGTAAGT CCTTAGTTAA TATAAATGAT AATATTGTAA TAGAAAGGCC AACTTATGGA
GGAGCACTTT TAGTATTTAA GCTTAGAAGA GCAAATATAT TAGAAATTCC AATGGAGAAG
GATGGTCCTA ATATTGAAAA GTTTGAAAAT TTATTAAAGA GAAATAAAAT AAAGTGTTTT
TATACTATGA GTTACTTTCA GAACCCTACA GGGATAAGTT GTTCTTTAGA AAAAAAGAAA
AAAATAATAG AGCTTGCACA TAAATATGAT TTTTACATAT TAGAAGATGA TTATCTTTCA
GAATTAGTTT ATTCTAATGA TTTAGAGTAT ATACCATATA GGAGTTTAGA TTCTGAAAGA
GTTATATATA TAAAAAGTTT TTCTAAAATA TTTCTACCAG GTATAAGAAT GGGATATTTA
ATAGCACCAG ATAAATTTAA AGAGGAATTT CAAGCTTTAA AGTTTAATAG TGATATAGCT
ACCTCAAGTT TAATGCAAAG AGCTCTTCAG GATTATATTG CAAAGGGATA TTGGAAAGAG
CACATAGAAA GATTAAATGA GGAATATTCA AAGAGATATA ATTTTATAAA AGAACTTATA
GATAATAAAT TAGGAGATAT GGTTTCTTAT AGAGAGCCTA AGGGAGGACT TAATTTATTC
TTAAACATAA ATAAGAACAT AGACATAACT TCTAAAAAGT TATTTTATGA ACTGAAAGAT
AGACAAACTA TAATTACTCC AGGAAGCATA TTCTTTAAAA ATCCTAATGA TGGAGATAAA
AGCTTTAGAA TTGGATTTTC CCAAATAGAT TATAGTAAGA TAGAAAAAGG AATAGATAAT
ATATACGATG TATTAAAAGG TAGGTAG
|
|---|
| Protein sequence | MKKFSVVFKE DLCKYLIIYD NIKSLIENGE ISEGEKLPTI RELADFLEVN KVTVINAYKK
LVQEGYAYQS QGSGTYAKNK EVGKSFKHDY NDLFRKIASG DLKNWIDFTG ETTSANFFQV
EKLKKVLDNV LVRDGVEALM YSDPLGYLEL RRSINEEFWN GKNNLDNILI ISGAQQGIDI
VGKSLVNIND NIVIERPTYG GALLVFKLRR ANILEIPMEK DGPNIEKFEN LLKRNKIKCF
YTMSYFQNPT GISCSLEKKK KIIELAHKYD FYILEDDYLS ELVYSNDLEY IPYRSLDSER
VIYIKSFSKI FLPGIRMGYL IAPDKFKEEF QALKFNSDIA TSSLMQRALQ DYIAKGYWKE
HIERLNEEYS KRYNFIKELI DNKLGDMVSY REPKGGLNLF LNINKNIDIT SKKLFYELKD
RQTIITPGSI FFKNPNDGDK SFRIGFSQID YSKIEKGIDN IYDVLKGR
|
|---|
| |